Browse Element(s) Details


OsAffx.14548.1.S1_at

Description tigr:9633.m00421
TID=OsAffx.14548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0490011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04860Os.7603.1.S1_at11/115+2312729..2317681Agenet domain containing protein, expressed
LOC_Os05g04870Os.13800.1.S1_at11/115+2323408..2324853General stress protein 39, putative, expressed
LOC_Os05g04890OsAffx.26736.1.S1_at11/115+2329590..2332893expressed protein
LOC_Os05g04900OsAffx.14548.1.S1_at11/115+2338226..2338670hypothetical protein
LOC_Os05g04914OsAffx.14549.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.26736.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.15178.1.S1_s_at1/115+2341759..2349840expressed protein
LOC_Os05g04930OsAffx.26759.1.S1_x_at1/115+2353102..2354436Transferase family protein
LOC_Os05g04940Os.53203.1.S1_at10/115+2356515..2359852OBP33pep like protein, putative, expressed
LOC_Os05g04950Os.27656.1.S1_at10/115+2360215..2365132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14548.1.S1_at--443--1151Chr05:2338609..2338633 (25 bp)
AGTCGTCGAAAGTGAAGATGTTGCT
LOC_Os05g04900
OsAffx.14548.1.S1_at--415--731Chr05:2338592..2338616 (25 bp)
ATGTTGCTGCCGGAAGATTTCCTCA
LOC_Os05g04900
OsAffx.14548.1.S1_at--857--6671Chr05:2338590..2338614 (25 bp)
GTTGCTGCCGGAAGATTTCCTCAAC
LOC_Os05g04900
OsAffx.14548.1.S1_at--226--9191Chr05:2338585..2338609 (25 bp)
TGCCGGAAGATTTCCTCAACACCGT
LOC_Os05g04900
OsAffx.14548.1.S1_at--1130--3831Chr05:2338582..2338606 (25 bp)
CGGAAGATTTCCTCAACACCGTCCT
LOC_Os05g04900
OsAffx.14548.1.S1_at--73--4291Chr05:2338557..2338581 (25 bp)
CCTCTGCACTGCTTTCTTGTACAAG
LOC_Os05g04900
OsAffx.14548.1.S1_at--512--3851Chr05:2338554..2338578 (25 bp)
CTGCACTGCTTTCTTGTACAAGGCG
LOC_Os05g04900
OsAffx.14548.1.S1_at--1021--1971Chr05:2338550..2338574 (25 bp)
ACTGCTTTCTTGTACAAGGCGATGA
LOC_Os05g04900
OsAffx.14548.1.S1_at--1012--3611Chr05:2338542..2338566 (25 bp)
CTTGTACAAGGCGATGAATACCATC
LOC_Os05g04900
OsAffx.14548.1.S1_at--105--4631Chr05:2338532..2338556 (25 bp)
GCGATGAATACCATCGGCACGCTGG
LOC_Os05g04900
OsAffx.14548.1.S1_at--374--351Chr05:2338460..2338484 (25 bp)
ATCAAGAAGGAGGACTTTTGGTACG
LOC_Os05g04900
Target Sequence 
AGTCGTCGAAAGTGAAGATGTTGCTGCCGGAAGATTTCCTCAACACCGTCCTCCTCTGCACTGCTTTCTTGTACAAGGCG
ATGAATACCATCGGCACGCTGGCCACCATCTGGGCGACCGTCGTCCTGCTCGGTGGATTCTCCACCCTCATCAAGAAGGA
GGACTTTTGGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis