Browse Element(s) Details


Os.7603.1.S1_at

Description gb:AK110979.1
DB_XREF= gi:32996188
TID=Os.7603.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C07, full insert sequence.
FL= gb:AK110979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0486011/11Agenet domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04820Os.9514.1.S1_at11/115+2289413..2293459Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g04830OsAffx.25012.1.S1_at1/115+2303855..2306054expressed protein
LOC_Os05g04840OsAffx.26735.1.S1_at11/115+2307641..2308100hypothetical protein
LOC_Os05g04850OsAffx.4253.1.S1_s_at11/115+2309097..2312267RNA-binding protein 8A, putative, expressed
LOC_Os05g04860Os.7603.1.S1_at11/115+2312729..2317681Agenet domain containing protein, expressed
LOC_Os05g04870Os.13800.1.S1_at11/115+2323408..2324853General stress protein 39, putative, expressed
LOC_Os05g04890OsAffx.26736.1.S1_at11/115+2329590..2332893expressed protein
LOC_Os05g04900OsAffx.14548.1.S1_at11/115+2338226..2338670hypothetical protein
LOC_Os05g04914OsAffx.14549.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.26736.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.15178.1.S1_s_at1/115+2341759..2349840expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7603.1.S1_at--1082--9871Chr05:2313346..2313370 (25 bp)
TACATCAGATACAACCTCCAGTTCT
LOC_Os05g04860
Os.7603.1.S1_at--935--1151Chr05:2313312..2313336 (25 bp)
AGTCAGACAGCTACCATTGCCACAA
LOC_Os05g04860
Os.7603.1.S1_at--643--571Chr05:2313259..2313283 (25 bp)
ATCCATTTCCACTGGGCCATAGTCA
LOC_Os05g04860
Os.7603.1.S1_at--727--9811Chr05:2313210..2313234 (25 bp)
TACAGTTAACCAGGTACCCGCAGTT
LOC_Os05g04860
Os.7603.1.S1_at--1144--9951Chr05:2313196..2313220 (25 bp)
TACCCGCAGTTCCAGCAGACAATTA
LOC_Os05g04860
Os.7603.1.S1_at--510--9991Chr05:2313006..2313030 (25 bp)
TAGCCGCTGAGTCTCTTCCAAAGAT
LOC_Os05g04860
Os.7603.1.S1_at--933--7971Chr05:2312946..2312970 (25 bp)
GGATCCATCACGAGACACAACACTA
LOC_Os05g04860
Os.7603.1.S1_at--726--2071Chr05:2312880..2312904 (25 bp)
ACATCAGCATTCAGCCAGTACTTCA
LOC_Os05g04860
Os.7603.1.S1_at--498--5331Chr05:2312809..2312833 (25 bp)
GAAGTGCTACGTTGGCAGGCTGCAA
LOC_Os05g04860
Os.7603.1.S1_at--930--9011Chr05:2312789..2312813 (25 bp)
TGCAATGTTTGCAGCGTTGCCGCTA
LOC_Os05g04860
Os.7603.1.S1_at--348--6691Chr05:2312774..2312798 (25 bp)
GTTGCCGCTACTTTTAGGGACAGTT
LOC_Os05g04860
Target Sequence 
TACATCAGATACAACCTCCAGTTCTAGGATTAACAGTCAGACAGCTACCATTGCCACAACCAAGGGGATTTCGAGATCCA
GCCCGGTNATCCATTTCCACTGGGCCATAGTCATGGTGCACAAGCAGCTGTGACTTGTACAGTTAACCAGGTACCCGCAG
TTCCAGCAGACAATTAGGGATATAGGTGATAGACATGTCCAATAGCACAAATGTTTCAGAGCTGGATAGGATCTCAAACA
GTACTATAGCCGCTGAGTCTCTTCCAAAGATCTGAACTGGCTACCCCCTCAACCATTTGTGGAGAAGGATCCATCACGAG
ACACAACACTATATAAATATAAGAAATATAATGATGTTGGAGTCTTGGAGATACATCAGCATTCAGCCAGTACTTCATCC
CATGAAATGGATATATGCTTTACACGTTGTTGTTTTCATGACTGAAGTGCTACGTTGGCAGGCTGCAATGTTTGCAGCGT
TGCCGCTACTTTTAGGGACAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis