Browse Element(s) Details


Os.13800.1.S1_at

Description gb:AK110652.1
DB_XREF= gi:32995861
TID=Os.13800.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.13800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-E03, full insert sequence.
FL= gb:AK110652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0487011/11General stress protein 39, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04830OsAffx.25012.1.S1_at1/115+2303855..2306054expressed protein
LOC_Os05g04840OsAffx.26735.1.S1_at11/115+2307641..2308100hypothetical protein
LOC_Os05g04850OsAffx.4253.1.S1_s_at11/115+2309097..2312267RNA-binding protein 8A, putative, expressed
LOC_Os05g04860Os.7603.1.S1_at11/115+2312729..2317681Agenet domain containing protein, expressed
LOC_Os05g04870Os.13800.1.S1_at11/115+2323408..2324853General stress protein 39, putative, expressed
LOC_Os05g04890OsAffx.26736.1.S1_at11/115+2329590..2332893expressed protein
LOC_Os05g04900OsAffx.14548.1.S1_at11/115+2338226..2338670hypothetical protein
LOC_Os05g04914OsAffx.14549.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.26736.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.15178.1.S1_s_at1/115+2341759..2349840expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13800.1.S1_at--798--2151Chr05:2323966..2323990 (25 bp)
ACACGTCGTCGATCAACGCGTACAA
LOC_Os05g04870
Os.13800.1.S1_at--296--1471Chr05:2323783..2323807 (25 bp)
AGAAGGTGAGGCAGTTCGGCTCCCA
LOC_Os05g04870
Os.13800.1.S1_at--294--1231Chr05:2323771..2323795 (25 bp)
AGTTCGGCTCCCAGGTGCCCATGGG
LOC_Os05g04870
Os.13800.1.S1_at--746--9871Chr05:2323682..2323706 (25 bp)
TACATGTCCGGCCAGATGCTGCACG
LOC_Os05g04870
Os.13800.1.S1_at--1068--4411Chr05:2323672..2323696 (25 bp)
GCCAGATGCTGCACGTCAACGGCGG
LOC_Os05g04870
Os.13800.1.S1_at--591--9471Chr05:2323570..2323594 (25 bp)
TCTGTCTTGGCTTTTGCTGTGGGCA
LOC_Os05g04870
Os.13800.1.S1_at--753--7591Chr05:2323550..2323574 (25 bp)
GGGCATGTGCCCACGTGTTTGCAGT
LOC_Os05g04870
Os.13800.1.S1_at--295--1911Chr05:2323538..2323562 (25 bp)
ACGTGTTTGCAGTGCGAGTCCACCA
LOC_Os05g04870
Os.13800.1.S1_at--271--7111Chr05:2323510..2323534 (25 bp)
GTCAGTCAGTAGTAGCTTGTGATCC
LOC_Os05g04870
Os.13800.1.S1_at--769--4931Chr05:2323496..2323520 (25 bp)
GCTTGTGATCCTGTGATACTGTGAT
LOC_Os05g04870
Os.13800.1.S1_at--614--8991Chr05:2323410..2323434 (25 bp)
TGAATAAAAACGTCCCATCTCATCG
LOC_Os05g04870
Target Sequence 
ACACGTCGTCGATCAACGCGTACAAGGGGAACAAGACGCTGCTGGACTACACGGCGACCAAGGGCGCCATCGTGGCGTTC
ACGAGGGCNGCTGGCGCTGCAGCTGCCGGAGGAGGGGATCCGGGTGAACGGCGTCGCGCCGGGGCCGATCTGGACGCCGC
TGATCCCGGCGTCGTTCGCGGAGGAGAAGGTGAGGCAGTTCGGCTCCCAGGTGCCCATGGGCCGCGCCGGCCAGCCGTCG
GAGGTGGCGCCCAGCTTCGTCTTCCTCGCCAGCGACGACGCCTCCTACATGTCCGGCCAGATGCTGCACGTCAACGGCGG
CGTCATCGTCAANGGCTAGTTTTTCACTTGTCCCATNTCGCCGCCGGCGGGCGAGCTCGCCGTCGCCGGCCGCCGTGTCT
GTCTTGGCTTTTGCTGTGGGCATGTGCCCACGTGTTTGCAGTGCGAGTCCACCACNTGTCAGTCAGTAGTAGCTTGTGAT
CCTGTGATACTGTGATGANTAGAGTTGCAGTTGTTGTCTGTGTNCTAAGCTTGCAACTCAATCTGCAAGGAAGAAGATGA
ATAAAAACGTCCCATCTCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis