Browse Element(s) Details


OsAffx.25012.1.S1_at

Description tigr:9631.m00727
TID=OsAffx.25012.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g048301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04820Os.9514.1.S1_at11/115+2289413..2293459Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g04830OsAffx.25012.1.S1_at1/115+2303855..2306054expressed protein
LOC_Os05g04840OsAffx.26735.1.S1_at11/115+2307641..2308100hypothetical protein
LOC_Os05g04850OsAffx.4253.1.S1_s_at11/115+2309097..2312267RNA-binding protein 8A, putative, expressed
LOC_Os05g04860Os.7603.1.S1_at11/115+2312729..2317681Agenet domain containing protein, expressed
LOC_Os05g04870Os.13800.1.S1_at11/115+2323408..2324853General stress protein 39, putative, expressed
LOC_Os05g04890OsAffx.26736.1.S1_at11/115+2329590..2332893expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25012.1.S1_at--506--4271Chr03:4000599..4000623 (25 bp)
CCTCCGACTACACTGTCGAGATACA
NONE
OsAffx.25012.1.S1_at--355--5711Chr03:4000604..4000628 (25 bp)
GACTACACTGTCGAGATACAATGCT
NONE
OsAffx.25012.1.S1_at--734--2011Chr03:4000605..4000629 (25 bp)
ACTACACTGTCGAGATACAATGCTA
NONE
OsAffx.25012.1.S1_at--56--9871Chr03:4000607..4000631 (25 bp)
TACACTGTCGAGATACAATGCTACG
NONE
OsAffx.25012.1.S1_at--275--3331Chr03:4000609..4000633 (25 bp)
CACTGTCGAGATACAATGCTACGGC
NONE
OsAffx.25012.1.S1_at--1142--3872Chr05:2304438..2304546 (25 bp)
CTGTCGAGATACAATGCTACGGCCT
LOC_Os05g04830
OsAffx.25012.1.S1_at--767--7211Chr03:4000613..4000637 (25 bp)
GTCGAGATACAATGCTACGGCCTCT
NONE
OsAffx.25012.1.S1_at--1156--9351Chr03:4000614..4000638 (25 bp)
TCGAGATACAATGCTACGGCCTCTT
NONE
OsAffx.25012.1.S1_at--1126--4051Chr03:4000615..4000639 (25 bp)
CGAGATACAATGCTACGGCCTCTTC
NONE
OsAffx.25012.1.S1_at--278--6051Chr03:4000616..4000640 (25 bp)
GAGATACAATGCTACGGCCTCTTCG
NONE
OsAffx.25012.1.S1_at--272--1271Chr03:4000617..4000641 (25 bp)
AGATACAATGCTACGGCCTCTTCGC
NONE
Target Sequence 
CCTCCGACTACACTGTCGAGATACAATGCTACGGCCTCTTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis