Browse Element(s) Details


Os.9514.1.S1_at

Description gb:AK111821.1
DB_XREF= gi:37988484
TID=Os.9514.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9514 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018J24, full insert sequence.
FL= gb:AK111821.1 gb:AK104345.1 gb:AK099636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0482011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04810NANA5+2272841..2273492hypothetical protein
LOC_Os05g04820Os.9514.1.S1_at11/115+2289413..2293459Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g04830OsAffx.25012.1.S1_at1/115+2303855..2306054expressed protein
LOC_Os05g04840OsAffx.26735.1.S1_at11/115+2307641..2308100hypothetical protein
LOC_Os05g04850OsAffx.4253.1.S1_s_at11/115+2309097..2312267RNA-binding protein 8A, putative, expressed
LOC_Os05g04860Os.7603.1.S1_at11/115+2312729..2317681Agenet domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9514.1.S1_at--886--1251Chr05:2292910..2292934 (25 bp)
AGATTGCCCTTGTCTTTTGAACATA
LOC_Os05g04820
Os.9514.1.S1_at--436--451Chr05:2292934..2292958 (25 bp)
ATCTAGGTGCAATGCTACGCCATGC
LOC_Os05g04820
Os.9514.1.S1_at--1139--5531Chr05:2292988..2293012 (25 bp)
GAAACTTGTAACTCTCGCATATTGA
LOC_Os05g04820
Os.9514.1.S1_at--424--2431Chr05:2293103..2293127 (25 bp)
AAAAGACAGCTCTGGCCTTACGAGT
LOC_Os05g04820
Os.9514.1.S1_at--409--2331Chr05:2293146..2293170 (25 bp)
AAAGTACGTTCTAGAGTCTCCCTCT
LOC_Os05g04820
Os.9514.1.S1_at--1158--3111Chr05:2293181..2293205 (25 bp)
AATTTGCTGTTTTTTGTACACGACA
LOC_Os05g04820
Os.9514.1.S1_at--550--7031Chr05:2293196..2293220 (25 bp)
GTACACGACAACTCAACTTTTGGAT
LOC_Os05g04820
Os.9514.1.S1_at--1126--5131Chr05:2293271..2293295 (25 bp)
GCAAAACATGTGTCGGTAGCTCTCA
LOC_Os05g04820
Os.9514.1.S1_at--579--7851Chr05:2293285..2293309 (25 bp)
GGTAGCTCTCACAAACCATACAAGT
LOC_Os05g04820
Os.9514.1.S1_at--447--2811Chr05:2293306..2293330 (25 bp)
AAGTAGTCCCAAGCTTTTCAACTGC
LOC_Os05g04820
Os.9514.1.S1_at--576--10511Chr05:2293322..2293346 (25 bp)
TTCAACTGCTACCATGCACGTACAT
LOC_Os05g04820
Target Sequence 
AGATTGCCCTTGTCTTTTGAACATATCTAGGTGCAATGCTACGCCATGCATGGAACAGAGCAGAGATCAGAAGAAGCAGA
AACTTGTAACTCTCGCATATTGATTGGCAGGCAAAACACTGAAGTGTTTGATGTTTTGACACAGAATCGACCTNAACACT
TTCTCCTCACTTAAAGATCCTACAGTGTCATGGAAAAGACAGCTCTGGCCTTACGAGTNGCAGAAGAAGGGATAGAAAAG
TACGTTCTAGAGTCTCCCTCTTTTCTCTTGAAATTTGCTGTTTTTTGTACACGACAACTCAACTTTTGGATACTTGAGTT
TTGGTTCACTCTGTTTATCAAATAAATATAGACACGCATGGGCAAAACATGTGTCGGTAGCTCTCACAAACCATACAAGT
AGTCCCAAGCTTTTCAACTGCTACCATGCACGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9514.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis