Browse Element(s) Details


OsAffx.14549.1.S1_at

Description tigr:9633.m00423
TID=OsAffx.14549.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0491411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04860Os.7603.1.S1_at11/115+2312729..2317681Agenet domain containing protein, expressed
LOC_Os05g04870Os.13800.1.S1_at11/115+2323408..2324853General stress protein 39, putative, expressed
LOC_Os05g04890OsAffx.26736.1.S1_at11/115+2329590..2332893expressed protein
LOC_Os05g04900OsAffx.14548.1.S1_at11/115+2338226..2338670hypothetical protein
LOC_Os05g04914OsAffx.14549.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.26736.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.15178.1.S1_s_at1/115+2341759..2349840expressed protein
LOC_Os05g04930OsAffx.26759.1.S1_x_at1/115+2353102..2354436Transferase family protein
LOC_Os05g04940Os.53203.1.S1_at10/115+2356515..2359852OBP33pep like protein, putative, expressed
LOC_Os05g04950Os.27656.1.S1_at10/115+2360215..2365132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14549.1.S1_at--836--2911Chr05:2349765..2349789 (25 bp)
AAGGAGAGCCCGCTGCCGGAAGAGA
LOC_Os05g04914
OsAffx.14549.1.S1_at--456--2831Chr05:2349741..2349765 (25 bp)
AAGTTCAACATCTTCCTACTCTGCA
LOC_Os05g04914
OsAffx.14549.1.S1_at--142--9491Chr05:2349722..2349746 (25 bp)
TCTGCACTGCTTTCGTGTACAGGGT
LOC_Os05g04914
OsAffx.14549.1.S1_at--130--3851Chr05:2349716..2349740 (25 bp)
CTGCTTTCGTGTACAGGGTGATGAA
LOC_Os05g04914
OsAffx.14549.1.S1_at--1157--1051Chr05:2349702..2349726 (25 bp)
AGGGTGATGAATGGCCTCGGCACAC
LOC_Os05g04914
OsAffx.14549.1.S1_at--310--8871Chr05:2349698..2349722 (25 bp)
TGATGAATGGCCTCGGCACACTGGC
LOC_Os05g04914
OsAffx.14549.1.S1_at--1130--5371Chr05:2349622..2349646 (25 bp)
GAAGCAGGATTTCTGGTACGTCACC
LOC_Os05g04914
OsAffx.14549.1.S1_at--817--5011Chr05:2349619..2349643 (25 bp)
GCAGGATTTCTGGTACGTCACCGTC
LOC_Os05g04914
OsAffx.14549.1.S1_at--540--3031Chr05:2349267..2349605 (25 bp)
AATCCATCGGGCCTCTAGTGGTTGA
LOC_Os05g04914
OsAffx.14549.1.S1_at--144--491Chr05:2349262..2349282 (21 bp)
ATCGGGCCTCTAGTGGTTGAAATCG
LOC_Os05g04914
OsAffx.14549.1.S1_at--806--4451Chr05:2349257..2349281 (25 bp)
GCCTCTAGTGGTTGAAATCGTTCCC
LOC_Os05g04914
Target Sequence 
AAGGAGAGCCCGCTGCCGGAAGAGAAGTTCAACATCTTCCTACTCTGCACTGCTTTCGTGTACAGGGTGATGAATGGCCT
CGGCACACTGGCCACTATCTGGGCGACCGTCGTTCTGCTCGGTGGATTCTCCACCCTCGTCAAGAAGCAGGATTTCTGGT
ACGTCACCGTCATCGCCTTCGTCCAATCCATCGGGCCTCTAGTGGTTGAAATCGTTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis