Browse Element(s) Details


Os.53203.1.S1_at

Description gb:AK071339.1
DB_XREF= gi:32981362
TID=Os.53203.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090K18, full insert sequence.
FL= gb:AK106875.1 gb:AK071339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0494010/11OBP33pep like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g04890OsAffx.26736.1.S1_at11/115+2329590..2332893expressed protein
LOC_Os05g04900OsAffx.14548.1.S1_at11/115+2338226..2338670hypothetical protein
LOC_Os05g04914OsAffx.14549.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.26736.1.S1_at11/115+2341759..2349840expressed protein
LOC_Os05g04914OsAffx.15178.1.S1_s_at1/115+2341759..2349840expressed protein
LOC_Os05g04930OsAffx.26759.1.S1_x_at1/115+2353102..2354436Transferase family protein
LOC_Os05g04940Os.53203.1.S1_at10/115+2356515..2359852OBP33pep like protein, putative, expressed
LOC_Os05g04950Os.27656.1.S1_at10/115+2360215..2365132expressed protein
LOC_Os05g04960Os.24612.1.A1_at10/115+2378666..2379980phosphoglycerate mutase family protein, expressed
LOC_Os05g04970OsAffx.21897.5.S1_x_at6/115+2384482..2387423retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53203.1.S1_at--975--691Chr05:2358360..2358381 (22 bp)
ATGAGGGTACAGGACTCTCGCAGAA
LOC_Os05g04940
Os.53203.1.S1_at--73--6051Chr05:2358328..2358352 (25 bp)
GAGATCTGCGACTTTTTTGTCTACA
LOC_Os05g04940
Os.53203.1.S1_at--819--7151Chr05:2358310..2358334 (25 bp)
GTCTACATCCCTCAGTATGGTGGTG
LOC_Os05g04940
Os.53203.1.S1_at--485--9871Chr05:2358266..2358290 (25 bp)
TACAGTTGCAGCGTCGATTGTTCTT
LOC_Os05g04940
Os.53203.1.S1_at--827--6731NONE
GTTCTTCATCACTTTGGAGTCTGGG
NONE
Os.53203.1.S1_at--507--7631Chr05:2357176..2357200 (25 bp)
GGGACTCTACTGTACAGACTCAATT
LOC_Os05g04940
Os.53203.1.S1_at--407--4731Chr05:2357047..2357071 (25 bp)
GCTGTCAGACTAGAGTATCCCATCT
LOC_Os05g04940
Os.53203.1.S1_at--746--431Chr05:2357026..2357050 (25 bp)
ATCTCTTCTTTGCTTACCAATCCAG
LOC_Os05g04940
Os.53203.1.S1_at--847--3031Chr05:2357008..2357032 (25 bp)
AATCCAGTCTCTGCATTGGTTGAGG
LOC_Os05g04940
Os.53203.1.S1_at--64--2331Chr05:2356869..2356893 (25 bp)
AAAGTTGCAGTTTCGCGACTCGGTA
LOC_Os05g04940
Os.53203.1.S1_at--1066--111Chr05:2356835..2356859 (25 bp)
ATAGCACCCTTTCAAACCAAATTCT
LOC_Os05g04940
Target Sequence 
ATGAGGGTACAGGACTCTCGCAGAAGGAGTGCGAGATCTGCGACTTTTTTGTCTACATCCCTCAGTATGGTGGTGGAACC
GCATCATTGAATGTTACAGTTGCAGCGTCGATTGTTCTTCATCACTTTGGAGTCTGGGCTGGCTTTCCAGAACGAGGGCG
AGAAGGTAATAAATTCGTTGTAGCTGATAAACCAAAGGGCCAATCTAGGGGACTCTACTGTACAGACTCAATTGAAGAAG
TGATTGAAGAACGGAAGATGCGAAGAGAAAATGCCTGTGACATATTTGAGGAAAATGGAAGTAGCGAGCATCAGGAATCA
AATGTTTTAGGCACGATGCTGTCAGACTAGAGTATCCCATCTCTTCTTTGCTTACCAATCCAGTCTCTGCATTGGTTGAG
GGATGAAACTAATTTGCAATACCACATACAGCACAATATCCAGCACTGGTTTCTCTTTTCCAGGGTGGCACAAATATATG
TAGAGTAAATTTCAGAGAACTCCATTTTTATGGTCAAAGTTGCAGTTTCGCGACTCGGTAAGGAGCATAATAGCACCCTT
TCAAACCAAATTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis