Browse Element(s) Details


Os.24654.1.S1_at

Description gb:AK066047.1
DB_XREF= gi:32976065
TID=Os.24654.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049C10, full insert sequence.
FL= gb:AK066047.1 gb:AK063050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4393410/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43890Os.12269.2.A1_at11/1111+25994866..25997529expressed protein
LOC_Os11g43900Os.6.1.S1_a_at11/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43900Os.6.1.S1_x_at9/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43910NANA11+26007706..26008029hypothetical protein
LOC_Os11g43920OsAffx.7401.1.S1_at11/1111+26011205..26011724hypothetical protein
LOC_Os11g43934Os.24654.2.S1_x_at11/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934Os.24654.1.S1_at10/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934OsAffx.16132.1.S1_at1/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43950Os.27044.1.A1_at11/1111+26036058..26042520expressed protein
LOC_Os11g43960Os.23064.1.S1_at9/1111+26043095..26045690ADP,ATP carrier protein 2, mitochondrial precursor, putative, expressed
LOC_Os11g43970Os.26546.1.S1_at11/1111+26046155..26052730AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24654.1.S1_at--531--5051Chr11:26018594..26018618 (25 bp)
GCAGCTCACATGACCGGTAAGGTGT
LOC_Os11g43934
Os.24654.1.S1_at--136--5791Chr11:26018567..26018591 (25 bp)
GACGAAATGTTTATCTCCATGCCAT
LOC_Os11g43934
Os.24654.1.S1_at--925--10531Chr11:26018542..26018566 (25 bp)
TTCAGTTTCCTTTCCTCATCTTTTG
LOC_Os11g43934
Os.24654.1.S1_at--740--431Chr11:26018525..26018549 (25 bp)
ATCTTTTGCCCTTCGTTGAATCGCA
LOC_Os11g43934
Os.24654.1.S1_at--324--10751Chr11:26018510..26018534 (25 bp)
TTGAATCGCATCCATCAACTGCAAA
LOC_Os11g43934
Os.24654.1.S1_at--824--9891Chr11:26018484..26018508 (25 bp)
TACTAGATTATAGCACCTTGCCCCA
LOC_Os11g43934
Os.24654.1.S1_at--1121--4112Chr11:26018419..26018443 (25 bp)
CGCAGGCAAAGGTCGCACGCAGCTG
LOC_Os11g43934
Os.24654.1.S1_at--935--9491Chr11:26018348..26018372 (25 bp)
TCTCCGGTCGCGCTGATGAAATATG
LOC_Os11g43934
Os.24654.1.S1_at--1039--6571Chr11:26018223..26018247 (25 bp)
GATTCCATGCCATATCAACATTTGC
LOC_Os11g43934
Os.24654.1.S1_at--123--5111Chr11:26018173..26018197 (25 bp)
GCACGTGCAGTATTTTTCGTTGAAT
LOC_Os11g43934
Os.24654.1.S1_at--994--152Chr11:26018150..26018174 (25 bp)
ATTATCCGTGGCTGGACATATCATC
NONE
Target Sequence 
GCAGCTCACATGACCGGTAAGGTGTTCGACGAAATGTTTATCTCCATGCCATTTCAGTTTCCTTTCCTCATCTTTTGCCC
TTCGTTGAATCGCATCCATCAACTGCAAAATACTAGATTATAGCACCTTGCCCCAACTTCTCCTTTCTTCTTCTTCCTCC
CTTTTATTTCTCTCTCGCAGGCAAAGGTCGCACGCAGCTGCGGGAGGCCAGCACTGATTGGGCCGCGTGCGGCGGTTGGG
CGGTGGTCTCCGGTCGCGCTGATGAAATATGCAGTTTGACCAAGGGCAAAAGATGATGGAGGCAAAGTCCCAAAGTTTTC
AACTATATGATTTAATTTGTTAAATGTTATATATTATAAAAAAACAACCAAGATTCCATGCCATATCAACATTTGCAAAC
AGCTAGTAACATTTTCTTTTTGCACGTGCAGTATTTTTCGTTGAATTATCCGTGGCTGGACATATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis