Browse Element(s) Details


Os.24671.1.A1_at

Description gb:AK072562.1
DB_XREF= gi:32982585
TID=Os.24671.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24671 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132G14, full insert sequence.
FL= gb:AK072562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g383009/11SNF7 family protein, expressed
LOC_Os11g172902/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38250Os.6276.1.S1_at11/112+23126195..23134470expressed protein
LOC_Os02g38260Os.29747.1.S1_at8/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38260Os.29747.2.S1_at3/112+23136310..23138156Cellulase containing protein, expressed
LOC_Os02g38270NANA2+23139767..23141128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38280OsAffx.21897.5.S1_x_at4/112+23141444..23144385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g38290Os.49646.1.S1_at11/112+23147015..23149010Cytochrome P450 family protein, expressed
LOC_Os02g38300Os.24671.1.A1_at9/112+23153983..23157474SNF7 family protein, expressed
LOC_Os02g38310NANA2+23158663..23159891hypothetical protein
LOC_Os02g38320OsAffx.2905.1.S1_at10/112+23166739..23168824speckle-type POZ protein, putative, expressed
LOC_Os02g38330OsAffx.12394.1.S1_at11/112+23170058..23170436hypothetical protein
LOC_Os02g38340Os.24543.1.S1_at11/112+23171716..23176224Actin-like protein 3, putative, expressed
LOC_Os02g38350Os.54155.1.S1_at11/112+23177262..23180606regulator of chromosome condensation, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24671.1.A1_at--1139--5571Chr02:23155303..23155327 (25 bp)
GAAATGCTGCTCTTAAGTCTATCCA
LOC_Os02g38300
Os.24671.1.A1_at--324--2331Chr02:23155251..23155275 (25 bp)
AAAGTTGATGGACGACACAGCTGAG
LOC_Os02g38300
Os.24671.1.A1_at--1114--9531Chr02:23154397..23154421 (25 bp)
TCTACCAGATGCTCCAGTTACTGAA
LOC_Os02g38300
Os.24671.1.A1_at--814--1211Chr02:23154382..23154406 (25 bp)
AGTTACTGAAGTACGGCCTGAGGAG
LOC_Os02g38300
Os.24671.1.A1_at--248--1431Chr02:23154352..23154376 (25 bp)
AGAAACACCTGCTGTCACTGAGGCT
LOC_Os02g38300
Os.24671.1.A1_at--560--6271Chr02:23154294..23154318 (25 bp)
GATGTACCCACTAAGGCACCAGAGA
LOC_Os02g38300
Os.24671.1.A1_at--536--7911Chr02:23154104..23154128 (25 bp)
GGTTGCCAAATCTGCAGGAGTTGTA
LOC_Os02g38300
Os.24671.1.A1_at--991--171Chr02:23154068..23154092 (25 bp)
ATTTCATTGTAATACCACACCCGCA
LOC_Os02g38300
Os.24671.1.A1_at--566--2171Chr02:23154052..23154076 (25 bp)
ACACCCGCAAGTTGTCTCAGAATTT
LOC_Os02g38300
Os.24671.1.A1_at--946--6612Chr11:9605894..9605919 (25 bp)
GTTGGATTGCTTTTTGTCTGTTTAA
LOC_Os11g17290
Os.24671.1.A1_at--750--8712Chr11:9605909..9605933 (25 bp)
TGTCTGTTTAATAGTCCCAATGAGT
LOC_Os11g17290
Target Sequence 
GAAATGCTGCTCTTAAGTCTATCCAGNAATGAGATAAATATTGATGATGTCCAAAAGTTGATGGACGACACAGCTGAGGC
CAAGGCTTACCAAGATGAGATAAATGCTGCTCTGGGTGAGCAGCTATCTGCTGAGGATGAGGAGGCTGTTATGGCTGAAT
TTGAGAACTTGGAAGCACAGCTTGCCGTTGAGNCTCTACCAGATGCTCCAGTTACTGAAGTACGGCCTGAGGAGAAATCA
GAAACACCTGCTGTCACTGAGGCTGCAGAAGACATTGACGAGGTTATTGAGCTTCCTGATGTACCCACTAAGGCACCAGA
GAGACCAGAAGCTGCAGAAAAAACAAAAGTTTTGGAAGAACCCCTACCNGCATAGGGGGATGGAACTGAGTTGGATAGGG
ACCTCCAGGTTGCCAAATCTGCAGGAGTTGTAAATTATCTGCCATTTCATTGTAATACCACACCCGCAAGTTGTCTCAGA
ATTTTAATGTGTACAGCATCTAAATATGTTTGCTTCAAATTTTCAGTTATCAATTCTTGGAAAGTTGGATTGCTTTTTGT
CTGTTTAATAGTCCCAATGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24671.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis