Browse Element(s) Details


Os.24682.1.A1_at

Description gb:AK103507.1
DB_XREF= gi:32988716
TID=Os.24682.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131E17, full insert sequence.
FL= gb:AK103507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g518002/11peptidyl-tRNA hydrolase family protein, putative
LOC_Os03g226101/11Peptidyl-tRNA hydrolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51780Os.23058.1.S1_at11/115+29634938..29636421Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51810OsAffx.18284.3.S1_at9/115+29665047..29666047hypothetical protein
LOC_Os05g51820OsAffx.15202.1.S1_at11/115+29666475..29667253Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g51830Os.8519.1.S1_a_at11/115+29670091..29671678Histone deacetylase 2b, putative, expressed
LOC_Os05g51840NANA5+29671797..29673033Histone deacetylase 2a, putative, expressed
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0004045molecular_functionaminoacyl-tRNA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24682.1.A1_at--933--5811Chr05:29660635..29660659 (25 bp)
GACCCTGATCTGATGACTCTTGGTG
LOC_Os05g51800
Os.24682.1.A1_at--402--7152Chr05:29660664..29660688 (25 bp)
GTCTTTTTTGGCCTATTGCAGGTTG
LOC_Os05g51800
Os.24682.1.A1_at--1138--1691Chr05:29662319..29662343 (25 bp)
ACCAAGGGTTTATGAGTCTGCAAGA
NONE
Os.24682.1.A1_at--266--7951Chr05:29662363..29662387 (25 bp)
GGATAAGCATCTAGCAACCATCTGA
NONE
Os.24682.1.A1_at--146--5171Chr05:29662376..29662400 (25 bp)
GCAACCATCTGACAACACATGACAT
NONE
Os.24682.1.A1_at--552--5771Chr05:29662415..29662439 (25 bp)
GACGATAGACGCTGCTTATCTGAGA
NONE
Os.24682.1.A1_at--269--9471Chr05:29662433..29662457 (25 bp)
TCTGAGAAAGCGATCTAAGCCTGTT
NONE
Os.24682.1.A1_at--599--6411Chr05:29662444..29662468 (25 bp)
GATCTAAGCCTGTTGAATTTCCCTC
NONE
Os.24682.1.A1_at--1111--5211Chr05:29662458..29662482 (25 bp)
GAATTTCCCTCAAAAATGCCTGATG
NONE
Os.24682.1.A1_at--860--5431Chr05:29662486..29662510 (25 bp)
GAACCTGATAACATCTACACCTCAT
NONE
Os.24682.1.A1_at--362--10791Chr05:29662522..29662546 (25 bp)
TTGTCACACTTGCTACAATGGCCGT
NONE
Target Sequence 
GACCCTGATCTGATGACTCTTGGTGATAAGTCTTTTTTGGCCTATTGCAGGTTGGGCCACTTGCTGCCTATTATAAACTA
CCACTTAATCGTGTCCTTGTGGCATTTGATGGCACGGACCTGCCCTGTGGAATTCTTCGTTTACAACCTAAAGGAGGATT
CGGGCGCCATAATGGGTCTGTTGATTTTGTAACCATGTGTTTTAATGAAGTAATTTGTCATTCAAAAGATTGATTCAGCC
ATAGAAGAGGGTGTTGAGATTCTAAAGTTGGTTGTTACCAAGGGTTTATGAGTCTGCAAGATCATCAAATTGGATCAGAA
GGATAAGCATCTAGCAACCATCTGACAACACATGACATGCAACTGTAAAGATGACGATAGACGCTGCTTATCTGAGAAAG
CGATCTAAGCCTGTTGAATTTCCCTCAAAAATGCCTGATGGGAGAACCTGATAACATCTACACCTCATGATTCATTGATT
TGTCACACTTGCTACAATGGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24682.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis