Browse Element(s) Details


OsAffx.15202.1.S1_at

Description tigr:9633.m04897
TID=OsAffx.15202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=helix-loop-helix DNA-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5182011/11Helix-loop-helix DNA-binding domain containing protein
LOC_Os07g099101/11stripe rust resistance protein Yr10, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51810OsAffx.18284.3.S1_at9/115+29665047..29666047hypothetical protein
LOC_Os05g51820OsAffx.15202.1.S1_at11/115+29666475..29667253Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g51830Os.8519.1.S1_a_at11/115+29670091..29671678Histone deacetylase 2b, putative, expressed
LOC_Os05g51840NANA5+29671797..29673033Histone deacetylase 2a, putative, expressed
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein
LOC_Os05g51870OsAffx.32051.1.S1_x_at1/115+29688175..29688624hypothetical protein
LOC_Os05g51879NANA5+29688991..29689418NA
LOC_Os05g51890OsAffx.21779.1.S1_at10/115+29691646..29693191retrotransposon protein, putative, unclassified
LOC_Os05g51890OsAffx.21779.3.S1_at3/115+29691646..29693191retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15202.1.S1_at--997--2911Chr05:29666708..29666732 (25 bp)
AAGGAGCTACAGACGCTACTGCAAT
LOC_Os05g51820
OsAffx.15202.1.S1_at--530--1391Chr05:29666718..29666742 (25 bp)
AGACGCTACTGCAATCGCTGGAGGC
LOC_Os05g51820
OsAffx.15202.1.S1_at--703--891Chr05:29666739..29666763 (25 bp)
AGGCCCAGAAGAAGCGCAGGCAGCA
LOC_Os05g51820
OsAffx.15202.1.S1_at--301--9751Chr05:29666778..29666802 (25 bp)
TAATCTCGCCGGCATCGATATCGGC
LOC_Os05g51820
OsAffx.15202.1.S1_at--360--1611Chr05:29666934..29666958 (25 bp)
AGCTGCAGCTGGTAGCAGAGCTCGC
LOC_Os05g51820
OsAffx.15202.1.S1_at--353--8551Chr05:29666988..29667012 (25 bp)
TGGAGGCTAGGATCTCCGGCGCCAA
LOC_Os05g51820
OsAffx.15202.1.S1_at--779--2571Chr05:29667011..29667035 (25 bp)
AACGTGCTTCTTCGCACGCTCTCTA
LOC_Os05g51820
OsAffx.15202.1.S1_at--274--471Chr05:29667081..29667105 (25 bp)
ATCTCGAGGTGCTCCATCTCAACAT
LOC_Os05g51820
OsAffx.15202.1.S1_at--673--9531Chr05:29667129..29667153 (25 bp)
TCTACTCCTTCGTCCTCAAGATCGG
LOC_Os05g51820
OsAffx.15202.1.S1_at--676--4653Chr05:29667171..29667195 (25 bp)
GCGTCGACGACCTTGCCATGGAGGT
LOC_Os05g51820
OsAffx.15202.1.S1_at--793--831Chr05:29667188..29667212 (25 bp)
ATGGAGGTCCACCAGTCCTTCATGC
LOC_Os05g51820
Target Sequence 
AAGGAGCTACAGACGCTACTGCAATCGCTGGAGGCCCAGAAGAAGCGCAGGCAGCAGCCGCAGGCGCACCTAATCTCGCC
GGCATCGATATCGGCCTCCGGCGGCGGCAGCCCCAGCCCCACGCCCAGCCCGCGCTCCCTCATCACCTCCTGCTCTCCCA
CTGCCGCCGCCGGCAGCAGCGCCGGCAGCTCATCCTCCATCTCCCCCAAGGACGAAAATAAGCAGCAGCTGCAGCTGGTA
GCAGAGCTCGCCGCCTGCTGCAACTCCCCCATGGCCGACGTGGAGGCTAGGATCTCCGGCGCCAACGTGCTTCTTCGCAC
GCTCTCTAGGCGCGCCCCTCCCGTCAGGATCATCGCCCTTCTCGAGAGCCTCCATCTCGAGGTGCTCCATCTCAACATCA
CCACCATGGACGACACCGTCCTCTACTCCTTCGTCCTCAAGATCGGCCTCGACTGCCACCTCAGCGTCGACGACCTTGCC
ATGGAGGTCCACCAGTCCTTCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis