Browse Element(s) Details


OsAffx.4685.1.S1_at

Description tigr:9633.m04901
TID=OsAffx.4685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5186010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51810OsAffx.18284.3.S1_at9/115+29665047..29666047hypothetical protein
LOC_Os05g51820OsAffx.15202.1.S1_at11/115+29666475..29667253Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g51830Os.8519.1.S1_a_at11/115+29670091..29671678Histone deacetylase 2b, putative, expressed
LOC_Os05g51840NANA5+29671797..29673033Histone deacetylase 2a, putative, expressed
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein
LOC_Os05g51870OsAffx.32051.1.S1_x_at1/115+29688175..29688624hypothetical protein
LOC_Os05g51879NANA5+29688991..29689418NA
LOC_Os05g51890OsAffx.21779.1.S1_at10/115+29691646..29693191retrotransposon protein, putative, unclassified
LOC_Os05g51890OsAffx.21779.3.S1_at3/115+29691646..29693191retrotransposon protein, putative, unclassified
LOC_Os05g51900Os.12321.1.S1_at11/115+29701884..29702451expressed protein
LOC_Os05g51910Os.52633.1.S1_at1/115+29704114..29708654retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4685.1.S1_at--1056--2511Chr05:29681457..29681481 (25 bp)
AACTTCGGCAAGGACATCTGGGAGA
LOC_Os05g51860
OsAffx.4685.1.S1_at--284--10711Chr05:29681547..29681571 (25 bp)
TTGCTCAAGTCTCTCTGGAACGATC
LOC_Os05g51860
OsAffx.4685.1.S1_at--461--6431Chr05:29681694..29681718 (25 bp)
GATCTTCCGGGCAATCAGGAGCATA
LOC_Os05g51860
OsAffx.4685.1.S1_at--1043--9911Chr05:29681729..29681753 (25 bp)
TACTGCTCTTCTTTGCATCTTGCAA
LOC_Os05g51860
OsAffx.4685.1.S1_at--549--5151NONE
GCAACAGGCATAGGCTCAGCATCTA
NONE
OsAffx.4685.1.S1_at--1002--9651Chr05:29682900..29682923 (24 bp)
TCAGCATCTACAACCATGTGCAGGC
LOC_Os05g51860
OsAffx.4685.1.S1_at--194--2951Chr05:29682924..29682948 (25 bp)
AAGGCTGCGGCATATGCTCCACGTT
LOC_Os05g51860
OsAffx.4685.1.S1_at--14--271Chr05:29682935..29682959 (25 bp)
ATATGCTCCACGTTTCTAGGTTGGC
LOC_Os05g51860
OsAffx.4685.1.S1_at--518--10071Chr05:29682951..29682975 (25 bp)
TAGGTTGGCGCCCTATTCATGTCCA
LOC_Os05g51860
OsAffx.4685.1.S1_at--91--10551Chr05:29682966..29682990 (25 bp)
TTCATGTCCATGCAAGACCAAGCGC
LOC_Os05g51860
OsAffx.4685.1.S1_at--527--2671Chr05:29682985..29683009 (25 bp)
AAGCGCCGTCTGGAGGGACACGATA
LOC_Os05g51860
Target Sequence 
AACTTCGGCAAGGACATCTGGGAGACGGTGAGCAGCATGTTCGAGCTCAACCACATGGCCGAGGCGCAGCACAGCGCCTT
CGACGTCTCCTTGCTCAAGTCTCTCTGGAACGATCTCTTCTCCCAGATCTTCCGGGCAATCAGGAGCATACTGAATGGTA
TACTGCTCTTCTTTGCATCTTGCAACAGGCATAGGCTCAGCATCTACAACCATGTGCAGGCAAGGCTGCGGCATATGCTC
CACGTTTCTAGGTTGGCGCCCTATTCATGTCCATGCAAGACCAAGCGCCGTCTGGAGGGACACGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis