Browse Element(s) Details


Os.12321.1.S1_at

Description gb:AK121194.1
DB_XREF= gi:37990817
TID=Os.12321.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023086G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086G21, full insert sequence.
FL= gb:AK121194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5190011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51850Os.12748.2.S1_x_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51850Os.12748.1.S1_at11/115+29675947..29678145AT hook motif family protein, expressed
LOC_Os05g51860OsAffx.4685.1.S1_at10/115+29679907..29683767hypothetical protein
LOC_Os05g51870OsAffx.32051.1.S1_x_at1/115+29688175..29688624hypothetical protein
LOC_Os05g51879NANA5+29688991..29689418NA
LOC_Os05g51890OsAffx.21779.1.S1_at10/115+29691646..29693191retrotransposon protein, putative, unclassified
LOC_Os05g51890OsAffx.21779.3.S1_at3/115+29691646..29693191retrotransposon protein, putative, unclassified
LOC_Os05g51900Os.12321.1.S1_at11/115+29701884..29702451expressed protein
LOC_Os05g51910Os.52633.1.S1_at1/115+29704114..29708654retrotransposon protein, putative, unclassified
LOC_Os05g51920NANA5+29715395..29715910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51930NANA5+29717088..29724018retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12321.1.S1_at--183--3211Chr05:29702344..29702368 (25 bp)
CAATGGTGAGCCTGGCCCTGGTGCT
LOC_Os05g51900
Os.12321.1.S1_at--495--1831Chr05:29702278..29702302 (25 bp)
ACGCCCATGCCGGTGGCTTGAAGAA
LOC_Os05g51900
Os.12321.1.S1_at--874--2931Chr05:29702236..29702260 (25 bp)
AAGGCCGCGTCGTCTACGCCGACAT
LOC_Os05g51900
Os.12321.1.S1_at--579--2111Chr05:29702215..29702239 (25 bp)
ACATGAGATTGGTCGTTCCCTCCGA
LOC_Os05g51900
Os.12321.1.S1_at--606--131Chr05:29702115..29702139 (25 bp)
ATTCAACATCGACCTAGCATATATA
LOC_Os05g51900
Os.12321.1.S1_at--381--10211Chr05:29702073..29702097 (25 bp)
TATTTTCATGTGTTGTTTTCGCATT
LOC_Os05g51900
Os.12321.1.S1_at--439--10371Chr05:29702050..29702074 (25 bp)
TTTTATATAACCATGCGCGCTCTAG
LOC_Os05g51900
Os.12321.1.S1_at--410--611Chr05:29702038..29702062 (25 bp)
ATGCGCGCTCTAGTTGTACATGCAG
LOC_Os05g51900
Os.12321.1.S1_at--134--7031Chr05:29702023..29702047 (25 bp)
GTACATGCAGCCGATTGATGTGCAT
LOC_Os05g51900
Os.12321.1.S1_at--95--10271Chr05:29701999..29702023 (25 bp)
TTTGATTTATGCCTGCTCATTTTTA
LOC_Os05g51900
Os.12321.1.S1_at--564--2291Chr05:29701952..29701976 (25 bp)
AAATGAAACACTTTCTCCATGCATA
LOC_Os05g51900
Target Sequence 
CAATGGTGAGCCTGGCCCTGGTGCTGGTGGGGCTTCTCCTCGTCGCCACCACTGCTAACGCCAAGAACGCCCATGCCGGT
GGCTTGAAGAAGGGCGGCTCTGAAGCTGAAGGCCGCGTCGTCTACGCCGACATGAGATTGGTCGTTCCCTCCGACTCCGA
CTCCGCCCCCGCCCCCGCCCCTGCCTCCGCCTCTNGATGGGCCAGCACCTGCGCCATCCCCCAACAATTAATTCAACATC
GACCTAGCATATATATATACGTATATATTTGTTATTTTCATGTGTTGTTTTCGCATTTTATATAACCATGCGCGCTCTAG
TTGTACATGCAGCCGATTGATGTGCATTTGATTTATGCCTGCTCATTTTTATTTCTTTCTTTTTATTTACGTTAAATGAA
ACACTTTCTCCATGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis