Browse Element(s) Details


Os.24938.1.S1_at

Description gb:AK122105.1
DB_XREF= gi:37991751
TID=Os.24938.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-308-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126A16, full insert sequence.
FL= gb:AK061482.1 gb:AK122105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4140011/11Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41350Os.54142.1.S1_at11/1112+25589064..25594650HORMA domain containing protein, expressed
LOC_Os12g41360OsAffx.7855.1.S1_at10/1112+25595542..25596342hypothetical protein
LOC_Os12g41370OsAffx.32133.1.S1_x_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41370OsAffx.32133.1.S1_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41380OsAffx.20071.1.S1_x_at11/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41380Os.53443.1.S1_at10/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41390Os.6156.1.S1_a_at11/1112+25608238..25611838Homocysteine S-methyltransferase 3, putative, expressed
LOC_Os12g41400Os.24938.1.S1_at11/1112+25613833..25618619Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g41410OsAffx.20072.1.S1_at11/1112+25622771..25624261hypothetical protein
LOC_Os12g41420OsAffx.20073.1.S1_at11/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41420OsAffx.20077.1.S1_x_at1/1112+25629337..25629726lectin protein kinase, putative
LOC_Os12g41430OsAffx.32134.3.S1_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430OsAffx.32134.1.S1_s_at11/1112+25631101..25632756expressed protein
LOC_Os12g41430Os.18757.2.S1_x_at3/1112+25631101..25632756expressed protein
LOC_Os12g41440Os.55580.1.S1_at1/1112+25635595..25639713retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005739cellular_componentmitochondrion
GO:0003743molecular_functiontranslation initiation factor activity
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24938.1.S1_at--671--10671Chr12:25618103..25618127 (25 bp)
TTGCCCTTAGCCGTCGTGTTGAGAA
LOC_Os12g41400
Os.24938.1.S1_at--649--8711Chr12:25618189..25618213 (25 bp)
TGTCCGCTCTGAAGTGCAGTTGTTT
LOC_Os12g41400
Os.24938.1.S1_at--355--8251Chr12:25618215..25618239 (25 bp)
GGCAGAAGTCTACCAACAGTTTGAG
LOC_Os12g41400
Os.24938.1.S1_at--765--3131Chr12:25618340..25618364 (25 bp)
AATTCACCTACGGTCGATACTGAAG
LOC_Os12g41400
Os.24938.1.S1_at--1098--6471Chr12:25618355..25618379 (25 bp)
GATACTGAAGTTTGCCTACATTACT
LOC_Os12g41400
Os.24938.1.S1_at--314--2451Chr12:25618407..25618431 (25 bp)
AAAATCGTTTTCCTTGCCATGTTGA
LOC_Os12g41400
Os.24938.1.S1_at--132--11Chr12:25618440..25618464 (25 bp)
AGAAACCTACTACCCTTTGGATCAG
LOC_Os12g41400
Os.24938.1.S1_at--332--9531Chr12:25618480..25618504 (25 bp)
TCTCAGCGAGAATCAGTTATGCATG
LOC_Os12g41400
Os.24938.1.S1_at--793--3851Chr12:25618506..25618530 (25 bp)
CTGAGAATCAGTTGTGCATGGCATT
LOC_Os12g41400
Os.24938.1.S1_at--874--851Chr12:25618523..25618547 (25 bp)
ATGGCATTCACGTGTTGCAACCGAA
LOC_Os12g41400
Os.24938.1.S1_at--466--7051Chr12:25618549..25618573 (25 bp)
GTAACAAACATGACCAACACACTTA
LOC_Os12g41400
Target Sequence 
TTGCCCTTAGCCGTCGTGTTGAGAAGCATTGGCGACTCATCGGATGGGGCCAGATCCAGGCTGGCACGACGCTCGAAGTT
CCACCGTGTCCGCTCTGAAGTGCAGTTGTTTAGGCAGAAGTCTACCAACAGTTTGAGGTAAGAGAGAAGGAAATGTGGAA
GGGCAGAGAGCTCCTAGGCACTATTTTCGTGAGATGGAGGAGAAAACAAATGAGTTTGGAAGAGATGTCATTGCGTGAAT
TCACCTACGGTCGATACTGAAGTTTGCCTACATTACTAAGTTTGTTTACATTCTGAATGCTGGGAAAATCGTTTTCCTTG
CCATGTTGAAGTAGGCGAGAAACCTACTACCCTTTGGATCAGGATCATCNNNACACATCTCAGCGAGAATCAGTTATGCA
TGGCTGAGAATCAGTTGTGCATGGCATTCACGTGTTGCAACCGAAAGTAACAAACATGACCAACACACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis