Browse Element(s) Details


Os.54142.1.S1_at

Description gb:AK102167.1
DB_XREF= gi:32987376
TID=Os.54142.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086H12, full insert sequence.
FL= gb:AK102167.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4135011/11HORMA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41270OsAffx.7656.1.S1_x_at10/1112+25559004..25564343Protein kinase domain containing protein
LOC_Os12g41280OsAffx.19542.3.S1_x_at3/1112+25565849..25569757retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g41290Os.10023.1.S1_at8/1112+25571379..25578466Spc97/Spc98 family protein, expressed
LOC_Os12g41300OsAffx.20069.1.S1_at11/1112+25578869..25580708F-box domain containing protein
LOC_Os12g41310OsAffx.32132.1.S1_at11/1112+25580990..25581514RNA recognition motif family protein
LOC_Os12g41320OsAffx.7854.1.S1_at11/1112+25582090..25582524hypothetical protein
LOC_Os12g41320OsAffx.23570.1.S1_x_at1/1112+25582090..25582524hypothetical protein
LOC_Os12g41340OsAffx.25095.5.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41340OsAffx.25095.3.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41350Os.54142.1.S1_at11/1112+25589064..25594650HORMA domain containing protein, expressed
LOC_Os12g41360OsAffx.7855.1.S1_at10/1112+25595542..25596342hypothetical protein
LOC_Os12g41370OsAffx.32133.1.S1_x_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41370OsAffx.32133.1.S1_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41380OsAffx.20071.1.S1_x_at11/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41380Os.53443.1.S1_at10/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41390Os.6156.1.S1_a_at11/1112+25608238..25611838Homocysteine S-methyltransferase 3, putative, expressed
LOC_Os12g41400Os.24938.1.S1_at11/1112+25613833..25618619Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007129biological_processsynapsis
GO:0007130biological_processsynaptonemal complex formation
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54142.1.S1_at--1162--4571Chr12:25594105..25594129 (25 bp)
GCGGCCATAGGTTCACTTTTAACGA
LOC_Os12g41350
Os.54142.1.S1_at--464--1071Chr12:25594191..25594215 (25 bp)
AGGGCGACTAGAACGTACTTGTTGA
LOC_Os12g41350
Os.54142.1.S1_at--132--2791Chr12:25594362..25594386 (25 bp)
AAGAGGCTGCGACTTAGTTAGACAT
LOC_Os12g41350
Os.54142.1.S1_at--654--2091Chr12:25594383..25594407 (25 bp)
ACATGAAACCTGAGAGTCCACCCCA
LOC_Os12g41350
Os.54142.1.S1_at--931--5271Chr12:25594452..25594476 (25 bp)
GAATGTTCATTGTCAACCCAATCTT
LOC_Os12g41350
Os.54142.1.S1_at--309--9591Chr12:25594473..25594497 (25 bp)
TCTTGATTGTCAACCGTTTTGGCAT
LOC_Os12g41350
Os.54142.1.S1_at--312--7351Chr12:25594505..25594529 (25 bp)
GTGCAACTGCTTACAGTACTTTGGT
LOC_Os12g41350
Os.54142.1.S1_at--37--7011Chr12:25594536..25594560 (25 bp)
GTACTGTGTACCTGATGAGTGGACT
LOC_Os12g41350
Os.54142.1.S1_at--279--6131Chr12:25594552..25594576 (25 bp)
GAGTGGACTACTTATCTGATTTCAG
LOC_Os12g41350
Os.54142.1.S1_at--21--7451Chr12:25594598..25594622 (25 bp)
GTGTACTGACTACTGACAAGCTTCA
LOC_Os12g41350
Os.54142.1.S1_at--761--5611Chr12:25594612..25594636 (25 bp)
GACAAGCTTCATTTATCACACTGAT
LOC_Os12g41350
Target Sequence 
GCGGCCATAGGTTCACTTTTAACGATAAGAAATGCTGCATAGTGCACAAGGATGGGTTGGAGCTGAGAGGGGTTGGCAAA
CTGGATAGGGCGACTAGAACGTACTTGTTGAAACCCGGTGAAGACAGTAGAGCAGCAGCAGCAGCAAAAGAGGAGCCAAA
GATGTTGGCAGCAGCAGCAGAAGGATATGGTGGACCAAAACAAGAAGCCGACACGAAGAATATGAGGGGCAAAGGCAAGA
AGACTGCCCAAGCAACTAAGAGGCTGCGACTTAGTTAGACATGAAACCTGAGAGTCCACCCCACACACGGGAGAATCGGA
TACTTCACTAGAATTGGTGTTCATCTTGAATGTTCATTGTCAACCCAATCTTGATTGTCAACCGTTTTGGCATATTTTCA
GTGCAACTGCTTACAGTACTTTGGTAGGGTTGTACTGTGTACCTGATGAGTGGACTACTTATCTGATTTCAGTCATTGAT
TGAGTACATTTAAGTGTACTGACTACTGACAAGCTTCATTTATCACACTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis