Browse Element(s) Details


OsAffx.20069.1.S1_at

Description tigr:9640.m04043
TID=OsAffx.20069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4130011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41270OsAffx.7656.1.S1_x_at10/1112+25559004..25564343Protein kinase domain containing protein
LOC_Os12g41280OsAffx.19542.3.S1_x_at3/1112+25565849..25569757retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g41290Os.10023.1.S1_at8/1112+25571379..25578466Spc97/Spc98 family protein, expressed
LOC_Os12g41300OsAffx.20069.1.S1_at11/1112+25578869..25580708F-box domain containing protein
LOC_Os12g41310OsAffx.32132.1.S1_at11/1112+25580990..25581514RNA recognition motif family protein
LOC_Os12g41320OsAffx.7854.1.S1_at11/1112+25582090..25582524hypothetical protein
LOC_Os12g41320OsAffx.23570.1.S1_x_at1/1112+25582090..25582524hypothetical protein
LOC_Os12g41340OsAffx.25095.5.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41340OsAffx.25095.3.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41350Os.54142.1.S1_at11/1112+25589064..25594650HORMA domain containing protein, expressed
LOC_Os12g41360OsAffx.7855.1.S1_at10/1112+25595542..25596342hypothetical protein
LOC_Os12g41370OsAffx.32133.1.S1_x_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41370OsAffx.32133.1.S1_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41380OsAffx.20071.1.S1_x_at11/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41380Os.53443.1.S1_at10/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20069.1.S1_at--642--8191Chr12:25579656..25579680 (25 bp)
GGAAGACATGGCTCTCGCCAACTGG
LOC_Os12g41300
OsAffx.20069.1.S1_at--796--7291Chr12:25579611..25579635 (25 bp)
GTGCGAGGACTTGATCCGCCATCTG
LOC_Os12g41300
OsAffx.20069.1.S1_at--1145--6991Chr12:25579565..25579589 (25 bp)
GTACTCTCGCTCAACATCAGGTGGA
LOC_Os12g41300
OsAffx.20069.1.S1_at--831--9871Chr12:25579492..25579516 (25 bp)
TACTCTCCAAAACACCAAGCTTAAC
LOC_Os12g41300
OsAffx.20069.1.S1_at--213--9831Chr12:25579471..25579495 (25 bp)
TAACAAGGCTTCACATTCGAACAAG
LOC_Os12g41300
OsAffx.20069.1.S1_at--656--1971Chr12:25579224..25579465 (25 bp)
ACTGCTTCTCAGTCTTTGAGGGCCA
LOC_Os12g41300
OsAffx.20069.1.S1_at--996--1991Chr12:25579095..25579119 (25 bp)
ACTCCCTTCGAGAGGTGAGCGTGGA
LOC_Os12g41300
OsAffx.20069.1.S1_at--186--4251Chr12:25579052..25579076 (25 bp)
CCGTGAAGAGTACAGCGTCGTCGTC
LOC_Os12g41300
OsAffx.20069.1.S1_at--350--5911Chr12:25579027..25579051 (25 bp)
GAGCTCTTGCTTGCGACCATCGTGC
LOC_Os12g41300
OsAffx.20069.1.S1_at--337--1331Chr12:25578990..25579014 (25 bp)
AGAGGATGTCTCTTGCGTTCCATGG
LOC_Os12g41300
OsAffx.20069.1.S1_at--1094--2091Chr12:25578939..25578963 (25 bp)
ACATCGCTAGGGAGATCCCGCTGCA
LOC_Os12g41300
Target Sequence 
GGAAGACATGGCTCTCGCCAACTGGCTAGGCGGCGGCGGCGGCGCGTGCGAGGACTTGATCCGCCATCTGCCGGAGCTGC
CGCGTGTCACTGTACTCTCGCTCAACATCAGGTGGAGCTTCGCCAGCGGCGGCGGCGGCGGCATTGCGGCGAGCTTGGCG
TCACTACTCTCCAAAACACCAAGCTTAACAAGGCTTCACATTCGAACAAGCCCCTACTGCTTCTCAGTCTTTGAGGGCCA
AGAGGAGGTTGAGGCGGTGGCGGTGGCGGCACGAGGAAGCTGGCACATGTGGATGACAGATGGTGAGGACGATAGCCGGA
AGCCGAGGCTTGGTCGTCGTCTCGACTCCCTTCGAGAGGTGAGCGTGGACGGGCTCACCGGCGGCGACCGTGAAGAGTAC
AGCGTCGTCGTCGAGCTCTTGCTTGCGACCATCGTGCCACCGTCGCTAGAGAGGATGTCTCTTGCGTTCCATGGCCATGC
CGCGCCAGCCATCATTGATGACATCGCTAGGGAGATCCCGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis