Browse Element(s) Details


OsAffx.7656.1.S1_x_at

Description tigr:9640.m04040
TID=OsAffx.7656.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=serinethreonine protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4127010/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41230Os.18579.1.S1_at11/1112+25528166..25535447Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41240NANA12+25539357..25540479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g41250Os.19628.1.S1_a_at11/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41250OsAffx.8200.1.S1_at1/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41260Os.56254.1.S1_at11/1112+25549612..25552790protein kinase, putative, expressed
LOC_Os12g41270OsAffx.7656.1.S1_x_at10/1112+25559004..25564343Protein kinase domain containing protein
LOC_Os12g41280OsAffx.19542.3.S1_x_at3/1112+25565849..25569757retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g41290Os.10023.1.S1_at8/1112+25571379..25578466Spc97/Spc98 family protein, expressed
LOC_Os12g41300OsAffx.20069.1.S1_at11/1112+25578869..25580708F-box domain containing protein
LOC_Os12g41310OsAffx.32132.1.S1_at11/1112+25580990..25581514RNA recognition motif family protein
LOC_Os12g41320OsAffx.7854.1.S1_at11/1112+25582090..25582524hypothetical protein
LOC_Os12g41320OsAffx.23570.1.S1_x_at1/1112+25582090..25582524hypothetical protein
LOC_Os12g41340OsAffx.25095.5.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41340OsAffx.25095.3.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41350Os.54142.1.S1_at11/1112+25589064..25594650HORMA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7656.1.S1_x_at--993--592Chr12:25562884..25562908 (25 bp)
ATGCCGCGGCACGTCGACGGGAACA
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--95--2473Chr12:25562905..25562929 (25 bp)
AACATGGCGAAGAGGAAGCTCCCCG
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--534--953Chr12:25563041..25563065 (25 bp)
AGGAACACCGCGAACGACAGCGCGC
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--14--1672Chr12:25563059..25563083 (25 bp)
AGCGCGCCGAGCCTGTACCTGTTGT
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--621--8932Chr12:25563138..25563162 (25 bp)
TGACGAAGTCGTAGCGCACGGCGCC
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--867--1351Chr12:25563192..25563216 (25 bp)
AGAGCAGGAAGCAGCAGAGTGCATA
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--291--6631Chr12:25563247..25563271 (25 bp)
GTTGGTGGCCGTGTAGCTGTCGTCC
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--591--4071Chr12:25563286..25563310 (25 bp)
CGAGAGCACCTCGAAGGCGAGCACG
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--221--9071NONE
TGCTTTGCGAGGCACTTGGGTATAA
NONE
OsAffx.7656.1.S1_x_at--487--8631Chr12:25564232..25564256 (25 bp)
TGGGTATAAGCCCAATCTCGTCCAT
LOC_Os12g41270
OsAffx.7656.1.S1_x_at--177--8331Chr12:25564264..25564288 (25 bp)
GGCTCGCTAACCTCAGCAATGGCGG
LOC_Os12g41270
Target Sequence 
ATGCCGCGGCACGTCGACGGGAACATGGCGAAGAGGAAGCTCCCCGCCGCGCCGGCCGCCATGGGCACCGCCGCGAGCAG
CTGCCTCGTCGCCGGCGCCCGGCGACTCCACCGGGTAGAAGCACGCCACCGCGTTGCAGTCCACCATGGCCACGCCCAGG
AACACCGCGAACGACAGCGCGCCGAGCCTGTACCTGTTGTCCCTCGGCGGCGGCGAGCCGGAGCCGTCGATGAGGCGGAG
GCGGCTGCTGGGCGTGACGAAGTCGTAGCGCACGGCGCCCGTGCCGTCGCGGTAGCTGTCGGTGAAGGAGAGCAGGAAGC
AGCAGAGTGCATAGGCGCCGACGAGGCAGGCGATGAGCGCACGGTTGGTGGCCGTGTAGCTGTCGTCCGCGGTGGAGGAC
GGCGAGAGCACCTCGAAGGCGAGCACGGCGCCGGTCGGGAGGTGCTTTGCGAGGCACTTGGGTATAAGCCCAATCTCGTC
CATCCTCCTCGGCTCGCTAACCTCAGCAATGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7656.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis