Browse Element(s) Details


Os.18579.1.S1_at

Description gb:AK073942.1
DB_XREF= gi:32983965
TID=Os.18579.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075J10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075J10, full insert sequence.
FL= gb:AK073942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4123011/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41200Os.57433.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200Os.54183.1.S1_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200OsAffx.32130.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41210Os.55725.1.S1_at10/1112+25519942..25523784Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41220Os.6233.1.S1_at11/1112+25525213..25527494Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os12g41230Os.18579.1.S1_at11/1112+25528166..25535447Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41240NANA12+25539357..25540479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g41250Os.19628.1.S1_a_at11/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41250OsAffx.8200.1.S1_at1/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41260Os.56254.1.S1_at11/1112+25549612..25552790protein kinase, putative, expressed
LOC_Os12g41270OsAffx.7656.1.S1_x_at10/1112+25559004..25564343Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18579.1.S1_at--585--6151Chr12:25528829..25528853 (25 bp)
GAGGATCCAAACACTAGTTCGCTAG
LOC_Os12g41230
Os.18579.1.S1_at--686--10011Chr12:25528815..25528839 (25 bp)
TAGTTCGCTAGCTCCTTGAACACAA
LOC_Os12g41230
Os.18579.1.S1_at--139--1131Chr12:25528680..25528806 (25 bp)
AGTGCTTGAGGTTATATCCTTGTTT
LOC_Os12g41230
Os.18579.1.S1_at--559--7891Chr12:25528649..25528673 (25 bp)
GGTTCCTCAGAGGACCAGATCGCCA
LOC_Os12g41230
Os.18579.1.S1_at--72--2511Chr12:25528625..25528649 (25 bp)
AACATCTCAGTCTGCATCAGGGTTG
LOC_Os12g41230
Os.18579.1.S1_at--1150--3451Chr12:25528608..25528632 (25 bp)
CAGGGTTGGTTCTATCATGCTCTAA
LOC_Os12g41230
Os.18579.1.S1_at--1082--3511Chr12:25528593..25528617 (25 bp)
CATGCTCTAAGTTTGATGATCAACC
LOC_Os12g41230
Os.18579.1.S1_at--325--1211Chr12:25528558..25528582 (25 bp)
AGTTTCGGCAAGTTTCTGTTCAGAG
LOC_Os12g41230
Os.18579.1.S1_at--770--8991Chr12:25528531..25528555 (25 bp)
TGAAGTTTTCCCGTGCTTTCTCGAG
LOC_Os12g41230
Os.18579.1.S1_at--413--3671Chr12:25528516..25528540 (25 bp)
CTTTCTCGAGAGTGAAATGCCCAAT
LOC_Os12g41230
Os.18579.1.S1_at--695--9151Chr12:25528499..25528523 (25 bp)
TGCCCAATAATAATCCAGTACGTGT
LOC_Os12g41230
Target Sequence 
GAGGATCCAAACACTAGTTCGCTAGCTCCTTGAACACAACAAAATTTAGTGCTTGAGGTTATATCCTTGTTTATTTATGG
TTCCTCAGAGGACCAGATCGCCAACATCTCAGTCTGCATCAGGGTTGGTTCTATCATGCTCTAAGTTTGATGATCAACCA
AGGGAGTTTAGTTTCGGCAAGTTTCTGTTCAGAGGCTGAAGTTTTCCCGTGCTTTCTCGAGAGTGAAATGCCCAATAATA
ATCCAGTACGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis