Browse Element(s) Details


Os.6233.1.S1_at

Description gb:AK068060.1
DB_XREF= gi:32978078
TID=Os.6233.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013130B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013130B07, full insert sequence.
FL= gb:AK068060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4122011/11Ubiquitin-conjugating enzyme spm2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41200Os.57433.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200Os.54183.1.S1_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200OsAffx.32130.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41210Os.55725.1.S1_at10/1112+25519942..25523784Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41220Os.6233.1.S1_at11/1112+25525213..25527494Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os12g41230Os.18579.1.S1_at11/1112+25528166..25535447Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41240NANA12+25539357..25540479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g41250Os.19628.1.S1_a_at11/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41250OsAffx.8200.1.S1_at1/1112+25542887..25548446Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
LOC_Os12g41260Os.56254.1.S1_at11/1112+25549612..25552790protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6233.1.S1_at--926--671Chr12:25525872..25525896 (25 bp)
ATGAGGGCCGGATATACCAACTGAA
LOC_Os12g41220
Os.6233.1.S1_at--948--8811Chr12:25525640..25525664 (25 bp)
TGTTGTCAAATTGGCGCCGCGAGTA
LOC_Os12g41220
Os.6233.1.S1_at--957--6231Chr12:25525579..25525603 (25 bp)
GATGGCAGCATCACACAACCGGAAA
LOC_Os12g41220
Os.6233.1.S1_at--1078--8151Chr12:25525559..25525583 (25 bp)
GGAAACTAGTGCAGCCTCCAGAGGG
LOC_Os12g41220
Os.6233.1.S1_at--482--1531Chr12:25525411..25525435 (25 bp)
AGCTGAACTTCGCTGGTACTACCTT
LOC_Os12g41220
Os.6233.1.S1_at--1061--9871Chr12:25525395..25525419 (25 bp)
TACTACCTTGTACGTGGTCCGTGTA
LOC_Os12g41220
Os.6233.1.S1_at--340--9291Chr12:25525378..25525402 (25 bp)
TCCGTGTACGTCCTGTGTTTGTGTC
LOC_Os12g41220
Os.6233.1.S1_at--106--7451Chr12:25525353..25525377 (25 bp)
GTGTCTCGCTTGTTTGGTTAACAGT
LOC_Os12g41220
Os.6233.1.S1_at--813--9191Chr12:25525327..25525351 (25 bp)
TGCCAGTACGGCATTACCTCAAGAG
LOC_Os12g41220
Os.6233.1.S1_at--1050--6331Chr12:25525258..25525282 (25 bp)
GATGCTCTGCAGATTTGGCTATGTT
LOC_Os12g41220
Os.6233.1.S1_at--557--5291Chr12:25525230..25525254 (25 bp)
GAAGTGGTACTATGCTGGTTCTTTT
LOC_Os12g41220
Target Sequence 
ATGAGGGCCGGATATACCAACTGAAGCTTTTCTGCGACAAGGACTACCCAGACAGGCCACCAACTGTAAAATTTCACTCA
AGAATCAACATGACCTGTGTAAACCCAGAGAATGGATTGGTTGACCAAAGGAAGTTCAGCCTGTTGTCAAATTGGCGCCG
CGAGTACACAATGGAGGCTATCTTGNACCCAACTTAAGAAAGAGATGGCAGCATCACACAACCGGAAACTAGTGCAGCCT
CCAGAGGGGACATTCTTCTAGAAGCAGGCGCCCGCCACTCATCTCCGCATGCCATGGATGAACCATTGTAATTCTCTTTC
TATATATCGCATGAGATTTGAGCCGTNTGAACATTTGGTGCAAATGATTGTAGCTGAACTTCGCTGGTACTACCTTGTAC
GTGGTCCGTGTACGTCCTGTGTTTGTGTCGTGTCTCGCTTGTTTGGTTAACAGTTTGCCAGTACGGCATTACCTCAAGAG
ACAAAACTAACGAATTGGGGTAAAATCTTTGTAATGAATCTAGTGATGCTCTGCAGATTTGGCTATGTTTCTGAAGTGGT
ACTATGCTGGTTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis