Browse Element(s) Details


Os.57433.1.S1_x_at

Description gb:AY224547.1
DB_XREF= gi:29367645
TID=Os.57433.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 24091 centromere protein-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) isolate 24091 centromere protein-like protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4120011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41170Os.53126.1.S1_at11/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41170Os.54285.1.S1_at1/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41180Os.23412.1.S1_at11/1112+25484627..25488656LSTK-1-like kinase, putative, expressed
LOC_Os12g41190Os.22912.1.S1_at11/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41190Os.52703.3.S1_x_at1/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41200Os.57433.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200Os.54183.1.S1_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200OsAffx.32130.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41210Os.55725.1.S1_at10/1112+25519942..25523784Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41220Os.6233.1.S1_at11/1112+25525213..25527494Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os12g41230Os.18579.1.S1_at11/1112+25528166..25535447Tesmin/TSO1-like CXC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57433.1.S1_x_at--701--10551Chr12:25505672..25505696 (25 bp)
TTCTTGGTTCGACAACTCTCAGAGC
LOC_Os12g41200
Os.57433.1.S1_x_at--1033--1331Chr12:25505643..25505667 (25 bp)
AGAGTCGCGGCAGTCATTGCAAGCT
LOC_Os12g41200
Os.57433.1.S1_x_at--1014--1351Chr12:25505598..25505622 (25 bp)
AGAGAACTCCTCACTGTCAGGCAAA
LOC_Os12g41200
Os.57433.1.S1_x_at--43--8171Chr12:25505579..25505603 (25 bp)
GGCAAACTTTATGACTCCAGGGAGA
LOC_Os12g41200
Os.57433.1.S1_x_at--336--6291Chr12:25505537..25505561 (25 bp)
GATGATTTCAATACTCTCCTTGGTG
LOC_Os12g41200
Os.57433.1.S1_x_at--690--5191Chr12:25505510..25505534 (25 bp)
GCAATCAGTACAGACATCCTCGGTG
LOC_Os12g41200
Os.57433.1.S1_x_at--439--9231Chr12:25505494..25505518 (25 bp)
TCCTCGGTGTCGTTTTCAAAAGTCT
LOC_Os12g41200
Os.57433.1.S1_x_at--1125--1311Chr12:25505461..25505485 (25 bp)
AGAGGACATCTCAGCTGCAGTCTTT
LOC_Os12g41200
Os.57433.1.S1_x_at--722--8991Chr12:25505433..25505457 (25 bp)
TGAAGATTTCGGGTCTCTCCATGCA
LOC_Os12g41200
Os.57433.1.S1_x_at--1047--2691Chr12:25505366..25505390 (25 bp)
AAGCTTGGAGACCTGCAACTCGAGA
LOC_Os12g41200
Os.57433.1.S1_x_at--840--4971Chr12:25505305..25505329 (25 bp)
GCATCTGTGACAGCTCTGGTTCAGA
LOC_Os12g41200
Target Sequence 
TTCTTGGTTCGACAACTCTCAGAGCTGCAAGAGTCGCGGCAGTCATTGCAAGCTGAAGTCATCAAGCTGATTGAAGAGAA
CTCCTCACTGTCAGGCAAACTTTATGACTCCAGGGAGAAAGAGAAGACGGCCAACGATGATTTCAATACTCTCCTTGGTG
AAGCAATCAGTACAGACATCCTCGGTGTCGTTTTCAAAAGTCTTCATGATGAGAGGACATCTCAGCTGCAGTCTTTGCAT
GAAGATTTCGGGTCTCTCCATGCAGCAGGCAATGAGCTTTACCAGGAGATCAAGCTGATGAACAAGAAGCTTGGAGACCT
GCAACTCGAGAACAACTATCTCGAGAAGGAACTCAGTAAAACCATGAGCATCTGTGACAGCTCTGGTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57433.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis