Browse Element(s) Details


Os.23412.1.S1_at

Description gb:AK072382.1
DB_XREF= gi:32982405
TID=Os.23412.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.23412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075D08, full insert sequence.
FL= gb:AK072382.1 gb:AK101826.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4118011/11LSTK-1-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41140Os.7037.1.A1_s_at7/1112+25454030..25460115expressed protein
LOC_Os12g41150NANA12+25465655..25466982retrotransposon, putative, centromere-specific
LOC_Os12g41160OsAffx.7853.1.S1_x_at11/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41160OsAffx.25518.1.S1_x_at2/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41170Os.53126.1.S1_at11/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41170Os.54285.1.S1_at1/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41180Os.23412.1.S1_at11/1112+25484627..25488656LSTK-1-like kinase, putative, expressed
LOC_Os12g41190Os.22912.1.S1_at11/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41190Os.52703.3.S1_x_at1/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41200Os.57433.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200Os.54183.1.S1_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200OsAffx.32130.1.S1_x_at11/1112+25502530..25511306expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23412.1.S1_at--1011--671Chr12:25485135..25485159 (25 bp)
ATGACTCCAGGCAGCAGCGGTTCGA
LOC_Os12g41180
Os.23412.1.S1_at--457--1611Chr12:25485024..25485048 (25 bp)
AGCTGGGCATTCTGCTGAAGCCATT
LOC_Os12g41180
Os.23412.1.S1_at--705--5911Chr12:25484951..25484975 (25 bp)
GAGCTTCAAGGAGACGGCATCATAG
LOC_Os12g41180
Os.23412.1.S1_at--496--3371Chr12:25484923..25484947 (25 bp)
CACCTTGTATCAGGCGCGTCTAAAA
LOC_Os12g41180
Os.23412.1.S1_at--260--2271Chr12:25484901..25484925 (25 bp)
AAATCGCCAGTTTTGTCATGTGCAA
LOC_Os12g41180
Os.23412.1.S1_at--449--10851Chr12:25484825..25484849 (25 bp)
TTGGGAGGCAGCACCATCTCAGTGT
LOC_Os12g41180
Os.23412.1.S1_at--178--451Chr12:25484810..25484834 (25 bp)
ATCTCAGTGTTGCTGTTAACTCAAA
LOC_Os12g41180
Os.23412.1.S1_at--838--3271Chr12:25484789..25484813 (25 bp)
CAAAATCTACTTCTAGCTCTAGCTA
LOC_Os12g41180
Os.23412.1.S1_at--833--1571Chr12:25484775..25484799 (25 bp)
AGCTCTAGCTAGTTTCCAGTTTTTT
LOC_Os12g41180
Os.23412.1.S1_at--754--5431Chr12:25484667..25484691 (25 bp)
GAACCTTTGTAATCATGTGGCACCT
LOC_Os12g41180
Os.23412.1.S1_at--755--7531Chr12:25484651..25484675 (25 bp)
GTGGCACCTGCAATCATGTAGTGAT
LOC_Os12g41180
Target Sequence 
ATGACTCCAGGCAGCAGCGGTTCGACACCTCGTCGTTCCAGCAGCGTGCCGAGGCATTGGAAGGGCTGCTGGAGTTCAGC
GCGCAGCTGCTGCAGCAGGAGAGGTATGAGGAGCTGGGCATTCTGCTGAAGCCATTCGGACCGGNGAAAGCGTCTCCCAG
GGAGACGGCCATCTGGCTCACAAAGAGCTTCAAGGAGACGGCATCATAGCGCCACCTTGTATCAGGCGCGTCTAAAATCG
CCAGTTTTGTCATGTGCAATATTAGCTCAGGTAGTGGTAAACAATATTTAGGATTTGAGACTTTTAGCTGTTGGGAGGCA
GCACCATCTCAGTGTTGCTGTTAACTCAAAATCTACTTCTAGCTCTAGCTAGTTTCCAGTTTTTTACTTTCTATTAGGAA
TCAGCAATCAGCAGCAGGAGTTGTAGTAGTAGAACTGTAAGTTAAGCTGAAGATCTTGCAAGATCTTAGAACCTTTGTAA
TCATGTGGCACCTGCAATCATGTAGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23412.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis