Browse Element(s) Details


Os.22912.1.S1_at

Description gb:AK073324.1
DB_XREF= gi:32983347
TID=Os.22912.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22912 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030G12, full insert sequence.
FL= gb:AK073324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4119011/11tetratricopeptide repeat protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41160OsAffx.7853.1.S1_x_at11/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41160OsAffx.25518.1.S1_x_at2/1112+25470289..25473205IQ calmodulin-binding motif family protein, expressed
LOC_Os12g41170Os.53126.1.S1_at11/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41170Os.54285.1.S1_at1/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41180Os.23412.1.S1_at11/1112+25484627..25488656LSTK-1-like kinase, putative, expressed
LOC_Os12g41190Os.22912.1.S1_at11/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41190Os.52703.3.S1_x_at1/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41200Os.57433.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200Os.54183.1.S1_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200OsAffx.32130.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41210Os.55725.1.S1_at10/1112+25519942..25523784Tesmin/TSO1-like CXC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22912.1.S1_at--523--9171Chr12:25496125..25496149 (25 bp)
TGCCCCAGTGGTTAACATTGACAAG
LOC_Os12g41190
Os.22912.1.S1_at--534--6671Chr12:25495851..25495875 (25 bp)
GTTGCTTCACATTTTTGCGGCAATA
LOC_Os12g41190
Os.22912.1.S1_at--320--6171Chr12:25495822..25495846 (25 bp)
GAGGAGTCTTTCTCAAAGGCTGCTT
LOC_Os12g41190
Os.22912.1.S1_at--229--411Chr12:25495579..25495798 (25 bp)
ATCTCGTACCCTCAGGTCTGGAAAG
LOC_Os12g41190
Os.22912.1.S1_at--51--211Chr12:25495502..25495526 (25 bp)
ATTTGAGTCACCAATTCTGCGGAAG
LOC_Os12g41190
Os.22912.1.S1_at--165--6511Chr12:25495478..25495502 (25 bp)
GATATGGTTTGTCCCTAGCACAACT
LOC_Os12g41190
Os.22912.1.S1_at--894--1111Chr12:25495017..25495041 (25 bp)
AGTGCTTCCCCGTATATTCAAAGAA
LOC_Os12g41190
Os.22912.1.S1_at--82--2251Chr12:25494952..25494976 (25 bp)
AAATTCTTCCCCTGTTGTGGTCATA
LOC_Os12g41190
Os.22912.1.S1_at--1110--7811Chr12:25494934..25494958 (25 bp)
GGTCATATTCTTTCCTAGCTTACAG
LOC_Os12g41190
Os.22912.1.S1_at--267--6011Chr12:25494879..25494903 (25 bp)
GAGAGCTTAGATTTGCATGCCAGAT
LOC_Os12g41190
Os.22912.1.S1_at--834--9471Chr12:25494839..25494863 (25 bp)
TCTGTATTGTACACCGAGGCACACA
LOC_Os12g41190
Target Sequence 
TGCCCCAGTGGTTAACATTGACAAGGCCTTTGACTCACCCCACACTCACAGCAGTTGCTTCACATTTTTGCGGCAATATT
CCGAGGAGTCTTTCTCAAAGGCTGCTTGTATGGTAGCACCTAAGAGCGCCATCTCGTACCCTCAGGTCTGGAAAGGACAG
GGATCAAGAAAATGGAAGCTTGACCAGAGTGATGGTTTCTTTGTGCAATTTGAGTCACCAATTCTGCGGAAGATATGGTT
TGTCCCTAGCACAACTGAAAAGGGACGAGTATTATGCAGGAGTCCTGAGCTCCTGGACATTAGCATCCACGAAGTGCTTC
CCCGTATATTCAAAGAAACGGCTTGAATAAACAACAAATGGACAGTGAATGGCTCCCAAATTCTTCCCCTGTTGTGGTCA
TATTCTTTCCTAGCTTACAGTTGCAAAGGGGATATTTTTCATAGCGTGGTGAGAGCTTAGATTTGCATGCCAGATTTTGT
AAGCTGTTGATCTGTATTGTACACCGAGGCACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22912.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis