Browse Element(s) Details


OsAffx.32130.1.S1_x_at

Description tigr:9640.m04032
TID=OsAffx.32130.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4120011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41170Os.53126.1.S1_at11/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41170Os.54285.1.S1_at1/1112+25475014..25483324Root hair defective 3 GTP-binding protein containing protein, expressed
LOC_Os12g41180Os.23412.1.S1_at11/1112+25484627..25488656LSTK-1-like kinase, putative, expressed
LOC_Os12g41190Os.22912.1.S1_at11/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41190Os.52703.3.S1_x_at1/1112+25494779..25499127tetratricopeptide repeat protein, putative, expressed
LOC_Os12g41200Os.57433.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200Os.54183.1.S1_at11/1112+25502530..25511306expressed protein
LOC_Os12g41200OsAffx.32130.1.S1_x_at11/1112+25502530..25511306expressed protein
LOC_Os12g41210Os.55725.1.S1_at10/1112+25519942..25523784Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os12g41220Os.6233.1.S1_at11/1112+25525213..25527494Ubiquitin-conjugating enzyme spm2, putative, expressed
LOC_Os12g41230Os.18579.1.S1_at11/1112+25528166..25535447Tesmin/TSO1-like CXC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32130.1.S1_x_at--479--1631Chr12:25503056..25503080 (25 bp)
AGCGTGTCCGCAAGATGTCGGAGAA
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--162--4811Chr12:25503022..25503046 (25 bp)
GCTCGAGCAGGAGACGCAGCGCTTC
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--874--7771Chr12:25502878..25502902 (25 bp)
GGTGCAGCTGGTGGAGTACCTCTAC
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--35--8431Chr12:25502819..25502843 (25 bp)
GGCCGTCGTGCTGCATGAGAGCCAA
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--996--5991Chr12:25502803..25502827 (25 bp)
GAGAGCCAAGGCCATCGACGACTAA
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--1017--8431Chr12:25502794..25502818 (25 bp)
GGCCATCGACGACTAACTCTAATCA
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--962--2531Chr12:25502780..25502804 (25 bp)
AACTCTAATCAAGAATCTCCATGGA
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--913--6991Chr12:25502632..25502656 (25 bp)
GTAAATAATCTCGTGGACTAATCCT
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--916--5691Chr12:25502617..25502641 (25 bp)
GACTAATCCTAGTTTCGTGCTCTTA
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--399--1211Chr12:25502607..25502631 (25 bp)
AGTTTCGTGCTCTTAATCATATATA
LOC_Os12g41200
OsAffx.32130.1.S1_x_at--93--5491Chr12:25502576..25502600 (25 bp)
GAACTTCGATTAAGCATCGTTGTAA
LOC_Os12g41200
Target Sequence 
AGCGTGTCCGCAAGATGTCGGAGAAGATCGCGCGGCTCGAGCAGGAGACGCAGCGCTTCCAGCACGCGCTGCTCCGCCAC
GAGGAGGAGCGCGCCACCCGCCGCGCCGCCGCCGCCGCGGCGACGGCGGCGGCGAGCAGCGGCAAGTCGTCCGCCGCCGT
GCAGCGGCGATCGTCGAGGGTGCAGCTGGTGGAGTACCTCTACGGGCGCCGGCGCGACAGCCGCCGGCAGCGGCGCGGGC
CGTCGTGCTGCATGAGAGCCAAGGCCATCGACGACTAACTCTAATCAAGAATCTCCATGGATGGATGGACAAAGCAAGAA
GCGTTTAATTTTTATTTACTACTTCGTTTTAATTTCATTTTACCCAGTTTTAATTAATCAAAAGTGAAAAACTCGTAATC
ATTTTAATGTCGTGGGGGTGTAGGGTAAATAATCTCGTGGACTAATCCTAGTTTCGTGCTCTTAATCATATATATATCAT
GAACTTCGATTAAGCATCGTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32130.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis