Browse Element(s) Details


Os.10023.1.S1_at

Description gb:AK121782.1
DB_XREF= gi:37991405
TID=Os.10023.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093P19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093P19, full insert sequence.
FL= gb:AK121782.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g323409/11tubulin family protein, putative, expressed
LOC_Os12g412908/11Spc97/Spc98 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32290Os.49595.1.S1_at10/112+19061470..19066480expressed protein
LOC_Os02g32300OsAffx.20524.1.S1_at6/112+19067640..19071968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32310NANA2+19072431..19072844hypothetical protein
LOC_Os02g32320OsAffx.24535.1.S1_at11/112+19079105..19079716hypothetical protein
LOC_Os02g32330OsAffx.24536.1.S1_at11/112+19082554..19083893expressed protein
LOC_Os02g32340Os.10023.1.S1_at9/112+19085129..19091526tubulin family protein, putative, expressed
LOC_Os02g32350Os.11615.1.S2_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32350Os.11615.1.S1_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32360Os.47463.1.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32360Os.14491.2.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32370Os.20910.1.S1_at11/112+19116035..19119757Inositol polyphosphate kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015631molecular_functiontubulin binding
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10023.1.S1_at--346--5612Chr12:25577217..25577241 (25 bp)
GACAATGCTTTGTGGCCTCTGATAA
LOC_Os12g41290
Os.10023.1.S1_at--189--3771NONE
CTCTGATAAGTTGTGGGCCCTCATA
NONE
Os.10023.1.S1_at--575--8412Chr12:25577345..25577369 (25 bp)
GGCCCTCATAGCCAGTCGAGTTAAG
LOC_Os12g41290
Os.10023.1.S1_at--36--6612Chr12:25577380..25577404 (25 bp)
GATTGGCACTTGACTTCCACAACAT
LOC_Os12g41290
Os.10023.1.S1_at--515--1131NONE
AGTGCGTTGTATTTCTCCTGCGGAT
NONE
Os.10023.1.S1_at--956--9132Chr12:25577623..25577643 (21 bp)
TGCGGATCCTATCTTTCAAGCTCAA
LOC_Os12g41290
Os.10023.1.S1_at--659--9712Chr12:25577634..25577658 (25 bp)
TCAAGCTCAATGTTGGTCACTTCCC
LOC_Os12g41290
Os.10023.1.S1_at--74--4332Chr12:25577659..25577683 (25 bp)
CCATCTGGCGGATCTCGTTACGAGA
LOC_Os12g41290
Os.10023.1.S1_at--937--1671Chr02:19085395..19085419 (25 bp)
AGCCGTCTTGCAGTGCTCATAGGAA
LOC_Os02g32340
Os.10023.1.S1_at--218--10072Chr12:25577781..25577805 (25 bp)
TAGGATCTTAGGTGTTGCTCTCCAT
LOC_Os12g41290
Os.10023.1.S1_at--251--8212Chr12:25577862..25577886 (25 bp)
GGAAGGCATCACCATATCCCAGGAT
LOC_Os12g41290
Target Sequence 
GACAATGCTTTGTGGCCTCTGATAAGTTGTGGGCCCTCATAGCCAGTCGAGTTAAGACCATTCTTGGATTGGCACTTGAC
TTCCACAACATAGAACAGACTCTTGGTACTGGTGGAACTGCTCCAGCCGTCAAGGCAAGATGCGAGATNGAAGTGGATCG
CATCGAGAAGCAATTTGACGAGTGCGTTGTATTTCTCCTGCGGATCCTATCTTTCAAGCTCAATGTTGGTCACTTCCCCC
ATCTGGCGGATCTCGTTACGAGAATCAATTACAACCACTATTACATGTCTGACAGCGGAAGCTTCTCTGCCATCCCTGGA
TCTCGGCCACGGTAGCCGTCTTGCAGTGCTCATAGGAATATAGGATCTTAGGTGTTGCTCTCCATTTTGTGGGGAATGTA
TATATTCTGGATTTGTAAAGTGTGGTCAATGCTGATGCAGCCAGGAAGGCATCACCATATCCCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis