Browse Element(s) Details


OsAffx.24535.1.S1_at

Description tigr:9630.m03061
TID=OsAffx.24535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3232011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32280OsAffx.24534.1.S1_at11/112+19053005..19057488expressed protein
LOC_Os02g32290Os.49595.1.S1_at10/112+19061470..19066480expressed protein
LOC_Os02g32300OsAffx.20524.1.S1_at6/112+19067640..19071968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32310NANA2+19072431..19072844hypothetical protein
LOC_Os02g32320OsAffx.24535.1.S1_at11/112+19079105..19079716hypothetical protein
LOC_Os02g32330OsAffx.24536.1.S1_at11/112+19082554..19083893expressed protein
LOC_Os02g32340Os.10023.1.S1_at9/112+19085129..19091526tubulin family protein, putative, expressed
LOC_Os02g32350Os.11615.1.S2_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32350Os.11615.1.S1_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24535.1.S1_at--174--8371Chr02:19079171..19079195 (25 bp)
GGCGGGAGAGACGACCTCCTGATCA
LOC_Os02g32320
OsAffx.24535.1.S1_at--766--6011Chr02:19079176..19079200 (25 bp)
GAGAGACGACCTCCTGATCATCTTC
LOC_Os02g32320
OsAffx.24535.1.S1_at--740--1391Chr02:19079179..19079203 (25 bp)
AGACGACCTCCTGATCATCTTCATG
LOC_Os02g32320
OsAffx.24535.1.S1_at--1070--8831Chr02:19079190..19079214 (25 bp)
TGATCATCTTCATGTGGACCAAGAA
LOC_Os02g32320
OsAffx.24535.1.S1_at--828--7191Chr02:19079240..19079264 (25 bp)
GTCGTGGCCAAGTGCAGGGAGCTCT
LOC_Os02g32320
OsAffx.24535.1.S1_at--331--3931Chr02:19079338..19079362 (25 bp)
CGGCTACTACTTCGGCCGGAGCTAC
LOC_Os02g32320
OsAffx.24535.1.S1_at--178--8431Chr02:19079351..19079375 (25 bp)
GGCCGGAGCTACGAGTTCTCGTGCT
LOC_Os02g32320
OsAffx.24535.1.S1_at--1082--1551Chr02:19079357..19079381 (25 bp)
AGCTACGAGTTCTCGTGCTCCGCCA
LOC_Os02g32320
OsAffx.24535.1.S1_at--193--7791Chr02:19079386..19079410 (25 bp)
GGTCGCCTTCGCTCCGGCGAAAGGG
LOC_Os02g32320
OsAffx.24535.1.S1_at--84--9211Chr02:19079439..19079463 (25 bp)
TGCCACCCTGCGTGGGAGCCAAGCA
LOC_Os02g32320
OsAffx.24535.1.S1_at--1004--9511Chr02:19079613..19079637 (25 bp)
TCTACGAGCAGCTGAGGTCGCAGGT
LOC_Os02g32320
Target Sequence 
GGCGGGAGAGACGACCTCCTGATCATCTTCATGTGGACCAAGAAGGCCATGCTCGCCGCCGTCGTGGTGGTCGTGGCCAA
GTGCAGGGAGCTCTGGGAAGGGGTGCTCACGGCGGGCTCCGGCTGCGGCTGCGTGTCGCGTTCCGCCGCCGCCGCCGACG
ACGACGACGGCTACTACTTCGGCCGGAGCTACGAGTTCTCGTGCTCCGCCACCCCGGTCGCCTTCGCTCCGGCGAAAGGG
CGGCGGCGCCGGCGGCGCTGCCTGCTGCTGCCACCCTGCGTGGGAGCCAAGCAGGCGAGGGAGATGCTGCGGGAGGCGGC
GATGATGTCCCCGGCGCCGCCTGTCGGTGCCGGCGGCGGTCGACGCTCGCCGCCGGAGCGGTCGCCGCAGTGGTGGAGGG
AGCAGGAGATCGACGGCCTCGCGGAGGAGTTCATCAGCCGGTTCTACGAGCAGCTGAGGTCGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis