Browse Element(s) Details


Os.49595.1.S1_at

Description gb:AK069352.1
DB_XREF= gi:32979376
TID=Os.49595.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014N14, full insert sequence.
FL= gb:AK069352.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3229010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32270OsAffx.2826.1.S1_at11/112+19048045..19048578hypothetical protein
LOC_Os02g32280OsAffx.24534.1.S1_at11/112+19053005..19057488expressed protein
LOC_Os02g32290Os.49595.1.S1_at10/112+19061470..19066480expressed protein
LOC_Os02g32300OsAffx.20524.1.S1_at6/112+19067640..19071968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32310NANA2+19072431..19072844hypothetical protein
LOC_Os02g32320OsAffx.24535.1.S1_at11/112+19079105..19079716hypothetical protein
LOC_Os02g32330OsAffx.24536.1.S1_at11/112+19082554..19083893expressed protein
LOC_Os02g32340Os.10023.1.S1_at9/112+19085129..19091526tubulin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49595.1.S1_at--1031--9971Chr02:19065884..19065908 (25 bp)
TACCAATAGCCTTAGCGGAAGCACT
LOC_Os02g32290
Os.49595.1.S1_at--1159--6471Chr02:19065929..19065953 (25 bp)
GATACGCACTACAATGTTGCCCGTG
LOC_Os02g32290
Os.49595.1.S1_at--159--5931Chr02:19065967..19065991 (25 bp)
GAGCTTGCTGCTCATAGAGTCTAGA
LOC_Os02g32290
Os.49595.1.S1_at--1015--9891Chr02:19066033..19066057 (25 bp)
TACTAGCCGTCCAAATCAGCCAAGG
LOC_Os02g32290
Os.49595.1.S1_at--356--2951Chr02:19066054..19066078 (25 bp)
AAGGCCTGATCCTGTGGCGAGACCG
LOC_Os02g32290
Os.49595.1.S1_at--674--10711NONE
TTGCTGCATTGTTGTTCCCAAGGAG
NONE
Os.49595.1.S1_at--1027--971Chr02:19066116..19066140 (25 bp)
AGGAGAGCCTCTTGCAAGGCAGCAC
LOC_Os02g32290
Os.49595.1.S1_at--843--2271Chr02:19066177..19066201 (25 bp)
AAATCCTGCACTGACTCTTCGAGAG
LOC_Os02g32290
Os.49595.1.S1_at--628--2671Chr02:19066232..19066256 (25 bp)
AAGCTCTAGTTAGCACCTGGGTTGA
LOC_Os02g32290
Os.49595.1.S1_at--539--10211Chr02:19066428..19066452 (25 bp)
TATTGCGGTTTTCGTTTCTGGTCGA
LOC_Os02g32290
Os.49595.1.S1_at--138--10311Chr02:19066442..19066466 (25 bp)
TTTCTGGTCGATTTCCATGTGTGGA
LOC_Os02g32290
Target Sequence 
TACCAATAGCCTTAGCGGAAGCACTACAATGATGGAACTAGTCTAGATACGCACTACAATGTTGCCCGTGGCACACCCCG
AGTGAGCTTGCTGCTCATAGAGTCTAGATATGGCATCATCTACGCACTCCCTCCTAGTGCTGCTACTCCTACTAGCCGTC
CAAATCAGCCAAGGCCTGATCCTGTGGCGAGACCGGGATTCTGGTGGTTCGATTGCTGCATTGTTGTTCCCAAGGAGAGC
CTCTTGCAAGGCAGCACGGCCTAGCCGGTCACCAGCTACAGAGCAGGCCAAGCAAATCCTGCACTGACTCTTCGAGAGTT
CAAGGCAAGGGGCAGTCTTCAACTGATGAAGCTCTAGTTAGCACCTGGGTTGATGATGAATGTATACAGGCCATCATAAT
CTGTTGTCCTGTGAGGAGTAGGAACGTAAACATTGATCATTCCTGAATTTGTGCTCTTAAGTAACTCNNATCGATCTTTG
ACATGGCTTTGTTGCCCCCCACAGGATTTTGATNTGTANATAAATGTGATCAGATGAATCCAAGGTATTGCGGTTTTCGT
TTCTGGTCGATTTCCATGTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis