Browse Element(s) Details


OsAffx.24534.1.S1_at

Description tigr:9630.m03056
TID=OsAffx.24534.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3228011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32270OsAffx.2826.1.S1_at11/112+19048045..19048578hypothetical protein
LOC_Os02g32280OsAffx.24534.1.S1_at11/112+19053005..19057488expressed protein
LOC_Os02g32290Os.49595.1.S1_at10/112+19061470..19066480expressed protein
LOC_Os02g32300OsAffx.20524.1.S1_at6/112+19067640..19071968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32310NANA2+19072431..19072844hypothetical protein
LOC_Os02g32320OsAffx.24535.1.S1_at11/112+19079105..19079716hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24534.1.S1_at--339--4811Chr02:19056333..19056357 (25 bp)
GCTCGTGTTGTTTCAATGTCATCCT
LOC_Os02g32280
OsAffx.24534.1.S1_at--22--651Chr02:19056376..19056400 (25 bp)
ATGCATTCTGCATTCTGTCCTGTCA
LOC_Os02g32280
OsAffx.24534.1.S1_at--148--3691Chr02:19056408..19056432 (25 bp)
CTTTCCTCAGATTAGCAGCAGCAAT
LOC_Os02g32280
OsAffx.24534.1.S1_at--158--10851Chr02:19056616..19056639 (24 bp)
TTGGTGCTCGACACAGGTTATTCCT
LOC_Os02g32280
OsAffx.24534.1.S1_at--201--3851Chr02:19056683..19056707 (25 bp)
CTGCACTTCAGGTGTTCATCCGAGT
LOC_Os02g32280
OsAffx.24534.1.S1_at--15--10531Chr02:19056697..19056721 (25 bp)
TTCATCCGAGTGGAGGCGCCAGAAT
LOC_Os02g32280
OsAffx.24534.1.S1_at--680--2811Chr02:19056734..19056758 (25 bp)
AAGATAGCTACTACATCGCCCGTGA
LOC_Os02g32280
OsAffx.24534.1.S1_at--1077--8951Chr02:19056756..19056780 (25 bp)
TGACAGACCCCGTGTGACCTTGTTG
LOC_Os02g32280
OsAffx.24534.1.S1_at--134--6691Chr02:19056777..19056801 (25 bp)
GTTGCGCATGGACTCTCAGTATGAC
LOC_Os02g32280
OsAffx.24534.1.S1_at--565--3771Chr02:19056814..19056838 (25 bp)
CTCTCTCCTGAGTTGATTCACCAAA
LOC_Os02g32280
OsAffx.24534.1.S1_at--1058--6551Chr02:19056886..19056910 (25 bp)
GATTCAAATCTGCAACGGCTGTCGC
LOC_Os02g32280
Target Sequence 
GCTCGTGTTGTTTCAATGTCATCCTAATTCATGGTTCTGACATATGCATTCTGCATTCTGTCCTGTCAGTTTTTGCTTTC
CTCAGATTAGCAGCAGCAATCTGGATGTGCTCGCCCGACCACATAACGATGTATGCACCGGGTGTGATTGGGCCTGGAGA
AGGTCGCAGTCTGGAAGATTGGTGCTCGACACAGGTTATTCCTCCCCGTGTGTATGCAGACGAGGTTGCAGTAAGAGCCT
TGGCGGCTGCACTTCAGGTGTTCATCCGAGTGGAGGCGCCAGAATATGGAGGTCGCCAAGATAGCTACTACATCGCCCGT
GACAGACCCCGTGTGACCTTGTTGCGCATGGACTCTCAGTATGACATTGTCTACCCACTCTCTCCTGAGTTGATTCACCA
AAGGGCTAAGCGTGGAGGAGCGAGCAGGTTCTACTGCTGCATAGGTGGAGATTCAAATCTGCAACGGCTGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis