Browse Element(s) Details


OsAffx.24536.1.S1_at

Description tigr:9630.m03062
TID=OsAffx.24536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3233011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32290Os.49595.1.S1_at10/112+19061470..19066480expressed protein
LOC_Os02g32300OsAffx.20524.1.S1_at6/112+19067640..19071968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32310NANA2+19072431..19072844hypothetical protein
LOC_Os02g32320OsAffx.24535.1.S1_at11/112+19079105..19079716hypothetical protein
LOC_Os02g32330OsAffx.24536.1.S1_at11/112+19082554..19083893expressed protein
LOC_Os02g32340Os.10023.1.S1_at9/112+19085129..19091526tubulin family protein, putative, expressed
LOC_Os02g32350Os.11615.1.S2_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32350Os.11615.1.S1_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32360Os.47463.1.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32360Os.14491.2.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24536.1.S1_at--752--1251Chr02:19083382..19083406 (25 bp)
AGATTGTGCGAGCTCGTCTTGCGAA
LOC_Os02g32330
OsAffx.24536.1.S1_at--266--7491Chr02:19083415..19083439 (25 bp)
GTGGGCACCAAGAGCAACAGACAGT
LOC_Os02g32330
OsAffx.24536.1.S1_at--339--10451Chr02:19083525..19083549 (25 bp)
TTAGCTTCTACCATCGTAGCATCCG
LOC_Os02g32330
OsAffx.24536.1.S1_at--916--6951Chr02:19083540..19083564 (25 bp)
GTAGCATCCGAGTCGCTCCCAGAAG
LOC_Os02g32330
OsAffx.24536.1.S1_at--71--1351Chr02:19083563..19083587 (25 bp)
AGAGTTGGAGCAAAACCACGCCCTC
LOC_Os02g32330
OsAffx.24536.1.S1_at--1116--1171Chr02:19083607..19083631 (25 bp)
AGCCGATTCTTAGTGCCCCAAAAAT
LOC_Os02g32330
OsAffx.24536.1.S1_at--994--3971Chr02:19083721..19083745 (25 bp)
CGGTGTGCAGCATGAAAGGCTCGCT
LOC_Os02g32330
OsAffx.24536.1.S1_at--424--4791Chr02:19083739..19083763 (25 bp)
GCTCGCTGGAGAAAGGCCCCACTAA
LOC_Os02g32330
OsAffx.24536.1.S1_at--487--4151Chr02:19083768..19083792 (25 bp)
CGCGTCACTAGGGAGCATGTTGTCG
LOC_Os02g32330
OsAffx.24536.1.S1_at--771--6071Chr02:19083794..19083818 (25 bp)
GAGTAGAGGCTTGTGTCGCCTTACT
LOC_Os02g32330
OsAffx.24536.1.S1_at--938--7451Chr02:19083806..19083830 (25 bp)
GTGTCGCCTTACTGTGTCACAAGAG
LOC_Os02g32330
Target Sequence 
AGATTGTGCGAGCTCGTCTTGCGAAGGAGGACGGTGGGCACCAAGAGCAACAGACAGTCTTCGAAGTGAAGGGTGATGGG
CATGATAGCAAAAAAAACACCTTGCCATCCGCCTCCCCTTCTGCAGCAACCGCACCCTCGGCCTTAGCTTCTACCATCGT
AGCATCCGAGTCGCTCCCAGAAGAGTTGGAGCAAAACCACGCCCTCCTCCCTACCGTCAAGGCTCAGCCGATTCTTAGTG
CCCCAAAAATTCTGAGCAGCAGTGACCTTACCTCCTCCACCGTCACCACGACCGGCACGGCGGCGAACAGCGAGGGGAAG
ACGGCAATGGTGGCCGCCACGGTGTGCAGCATGAAAGGCTCGCTGGAGAAAGGCCCCACTAATCCCCGCGTCACTAGGGA
GCATGTTGTCGGGAGTAGAGGCTTGTGTCGCCTTACTGTGTCACAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis