Browse Element(s) Details


Os.11615.1.S1_at

Description gb:CB628589
DB_XREF= gi:29623578
DB_XREF=OSIIEb04E03.r
CLONE=OSIIEb04E03
TID=Os.11615.1
CNT=65
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.11615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) RNA binding protein Rp120 mRNA, complete cds
FL= gb:AK063159.1 gb:AY320036.1 gb:AK065061.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3235011/11110 kDa 4SNc-Tudor domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32300OsAffx.20524.1.S1_at6/112+19067640..19071968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32310NANA2+19072431..19072844hypothetical protein
LOC_Os02g32320OsAffx.24535.1.S1_at11/112+19079105..19079716hypothetical protein
LOC_Os02g32330OsAffx.24536.1.S1_at11/112+19082554..19083893expressed protein
LOC_Os02g32340Os.10023.1.S1_at9/112+19085129..19091526tubulin family protein, putative, expressed
LOC_Os02g32350Os.11615.1.S2_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32350Os.11615.1.S1_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32360Os.47463.1.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32360Os.14491.2.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32370Os.20910.1.S1_at11/112+19116035..19119757Inositol polyphosphate kinase family protein, expressed
LOC_Os02g32380NANA2+19123027..19124601hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11615.1.S1_at--855--971Chr02:19095660..19095684 (25 bp)
AGGAGACTTGCAGCATTGCCTTCTC
LOC_Os02g32350
Os.11615.1.S1_at--397--10592Chr08:23108305..23108698 (25 bp)
TTCTCTGGTGTTAGATGCCCTGGTA
NONE
Os.11615.1.S1_at--558--6351Chr02:19095621..19095645 (25 bp)
GATGCCCTGGTAAAGATGAGCCCTA
LOC_Os02g32350
Os.11615.1.S1_at--999--6291Chr02:19095607..19095631 (25 bp)
GATGAGCCCTACTCGAACGAAGCTA
LOC_Os02g32350
Os.11615.1.S1_at--321--10611Chr02:19095395..19095419 (25 bp)
TTCTGTTCTTCTGGAGGCTGGTCTG
LOC_Os02g32350
Os.11615.1.S1_at--13--8591Chr02:19095377..19095401 (25 bp)
TGGTCTGGCCAAGCTTAGTTCATTT
LOC_Os02g32350
Os.11615.1.S1_at--1116--991Chr02:19095343..19095367 (25 bp)
AGGATTCCGGATGCAAATGTTCTAA
LOC_Os02g32350
Os.11615.1.S1_at--419--6131Chr02:19094998..19095022 (25 bp)
GAGTGGCTTCCATTCAACAACAGCT
LOC_Os02g32350
Os.11615.1.S1_at--298--3272Chr03:9152927..9153331 (25 bp)
CAACAGCTTGCATCTTTAAAACTTA
NONE
Os.11615.1.S1_at--781--6791Chr02:19094945..19094969 (25 bp)
GTTATTGGTGCTTTTAATCCTGTGA
LOC_Os02g32350
Os.11615.1.S1_at--110--6831Chr02:19094898..19094922 (25 bp)
GTTTAGTGCTGACAACTCCTGGAAT
LOC_Os02g32350
Target Sequence 
AGGAGACTTGCAGCATTGCCTTCTCTTTCTCTGGTGTTAGATGCCCTGGTAAAGATGAGCCCTACTCGAACGAAGCTATT
GCTTTGATGAGGAGGAGAATTCTACAGCGAGATGTGGAGATAGAGGTTGAAGCAGTTGATAGAACTGGGACATTCTTAGG
TTCCTTATGGGAGTCCAAAACCAACATGGCTTCTGTTCTTCTGGAGGCTGGTCTGGCCAAGCTTAGTTCATTTGGCTTGG
ATAGGATTCCGGATGCAAATGTTCTAATGAGGGCTGAACAGTCTGCAAAGCAGCAGAAACTCAAGATCTGGGAGAATTAT
GTAGAGGGTGAAGAAGTTTCCAATGGATCTGCATCTGAATCCAAACAAAAGGAAATTCTCAAGGTTGTTGTAACTGAAGT
CCTTGGTGGTGGAAAGTTCTATGTCCAAACAGTTGGTGACCANAGAGTGGCTTCCATTCAACAACAGCTTGCATCTTTAA
AACTTAAAGATGCACCTGTTATTGGTGCTTTTAATCCTGTGAAGGGGGAAATAGTTCTTGCTCAGTTTAGTGCTGACAAC
TCCTGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis