Browse Element(s) Details


Os.20910.1.S1_at

Description gb:AK072296.1
DB_XREF= gi:32982319
TID=Os.20910.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023018G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018G11, full insert sequence.
FL= gb:AK072296.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3237011/11Inositol polyphosphate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32340Os.10023.1.S1_at9/112+19085129..19091526tubulin family protein, putative, expressed
LOC_Os02g32350Os.11615.1.S2_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32350Os.11615.1.S1_at11/112+19092998..19099593110 kDa 4SNc-Tudor domain protein, putative, expressed
LOC_Os02g32360Os.47463.1.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32360Os.14491.2.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32370Os.20910.1.S1_at11/112+19116035..19119757Inositol polyphosphate kinase family protein, expressed
LOC_Os02g32380NANA2+19123027..19124601hypothetical protein
LOC_Os02g32390OsAffx.29532.2.S1_x_at11/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.2.S1_at10/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.1.S1_x_at4/112+19136481..19138368hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0009860biological_processpollen tube growth
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005886cellular_componentplasma membrane
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0050516molecular_functioninositol polyphosphate multikinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20910.1.S1_at--453--6711Chr02:19117046..19117070 (25 bp)
GTTCGAGGAGCAAACCCTGTACCAC
LOC_Os02g32370
Os.20910.1.S1_at--344--8531Chr02:19117165..19117189 (25 bp)
TGGACTTCGCGCATGTCGACGATGG
LOC_Os02g32370
Os.20910.1.S1_at--994--6571Chr02:19117199..19117223 (25 bp)
GATTGACCACAACTTCTTGGGCGGG
LOC_Os02g32370
Os.20910.1.S1_at--662--2071Chr02:19117252..19117276 (25 bp)
ACATTGTCGCCGAGGTTACCGAGAA
LOC_Os02g32370
Os.20910.1.S1_at--28--5291Chr02:19117274..19117298 (25 bp)
GAAGGCGTCTTCAGATCATTCTTGA
LOC_Os02g32370
Os.20910.1.S1_at--1117--1911Chr02:19119487..19119509 (23 bp)
ACGGTCCAACATTGTGTTCTTGCAA
LOC_Os02g32370
Os.20910.1.S1_at--612--5891Chr02:19119577..19119601 (25 bp)
GAGCTGCCGGTAACGTAAATGCGAA
LOC_Os02g32370
Os.20910.1.S1_at--153--9851Chr02:19119592..19119616 (25 bp)
TAAATGCGAAGCGACTCACCGGCAG
LOC_Os02g32370
Os.20910.1.S1_at--1138--3271Chr02:19119626..19119650 (25 bp)
CAAACTTACGGCAACTGATACCTTT
LOC_Os02g32370
Os.20910.1.S1_at--475--7771Chr02:19119686..19119710 (25 bp)
GGTGCATTGGATCTTACTCTTTAGT
LOC_Os02g32370
Os.20910.1.S1_at--805--2331Chr02:19119733..19119757 (25 bp)
AAAGATGGGCGTTGTCATTCCACCG
LOC_Os02g32370
Target Sequence 
GTTCGAGGAGCAAACCCTGTACCACTTCTACTCGGCGTCGATTCTGTTCGGCTACGACGCCAATGCGGCGGCGGCGGCTG
CTCCCGGAGGTGGAAGCGGCGGTGTAAGGGTGAAGCTGGTGGACTTCGCGCATGTCGACGATGGGGACGGGGTGATTGAC
CACAACTTCTTGGGCGGGCTCTGCTCGCTCATCAAGTTCATCGGCGACATTGTCGCCGAGGTTACCGAGAAGGCGTCTTC
AGATCATTCTTGAAAATTTTGTCAGCTTGGAGATCAGATGATTAAACGGTCCAACATTGTGTTCTTGCAAATGTCACACA
TAATAAAGTGCCATCAAATGGAGAAAGAGTCAATTGTTTGAAAGAGGAAACTTCACCGAGCTGCCGGTAACGTAAATGCG
AAGCGACTCACCGGCAGCTCTCCCGGCAAACTTACGGCAACTGATACCTTTTTTTGCATACCCCCCTTTAAAACCATGGG
ATTCGGGGTGCATTGGATCTTACTCTTTAGTTGTATTAAAGAAATGGTGAACAAAAGATGGGCGTTGTCATTCCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis