Browse Element(s) Details


Os.25045.1.S1_at

Description gb:AK068803.1
DB_XREF= gi:32978828
TID=Os.25045.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25045 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013161F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161F12, full insert sequence.
FL= gb:AK068803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0548011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05450OsAffx.3140.1.S1_at11/113+2674693..2675612expressed protein
LOC_Os03g05460Os.53473.1.S1_at11/113+2677884..2679521expressed protein
LOC_Os03g05470Os.18786.1.S1_at11/113+2686608..2689932Protein kinase domain containing protein, expressed
LOC_Os03g05480Os.25045.1.S1_at11/113+2692428..2695029Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05490OsAffx.12739.1.S1_at11/113+2696842..2697438hypothetical protein
LOC_Os03g05500Os.7112.1.S1_at11/113+2702148..2702946expressed protein
LOC_Os03g05510OsAffx.24980.1.S1_at11/113+2705807..2706670expressed protein
LOC_Os03g05520OsAffx.12740.1.S1_s_at11/113+2718728..2722222expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25045.1.S1_at--340--6551Chr03:2692946..2692970 (25 bp)
GATTATTGCCGCATGACATTCAAGA
LOC_Os03g05480
Os.25045.1.S1_at--831--5671Chr03:2692932..2692956 (25 bp)
GACATTCAAGAACCGAGCTGAGCTT
LOC_Os03g05480
Os.25045.1.S1_at--556--2431Chr03:2692897..2692921 (25 bp)
AAAAGAACACATGCACGGTCAAGTC
LOC_Os03g05480
Os.25045.1.S1_at--1088--3331Chr03:2692884..2692908 (25 bp)
CACGGTCAAGTCATGCGGCAGACAT
LOC_Os03g05480
Os.25045.1.S1_at--1114--8251Chr03:2692868..2692892 (25 bp)
GGCAGACATTTCAGATCCCACAAGT
LOC_Os03g05480
Os.25045.1.S1_at--324--4551Chr03:2692836..2692860 (25 bp)
GCGCCACCAGAGCATTCACAATGAT
LOC_Os03g05480
Os.25045.1.S1_at--1057--10711Chr03:2692782..2692806 (25 bp)
TTGCAGTATGGCTTTCAAGTGGTCA
LOC_Os03g05480
Os.25045.1.S1_at--718--4951Chr03:2692743..2692767 (25 bp)
GCATTTCCAAGTCCATGCTGGCAAA
LOC_Os03g05480
Os.25045.1.S1_at--771--3271Chr03:2692702..2692726 (25 bp)
CAACACCTGGGTGCAGCAAGATATA
LOC_Os03g05480
Os.25045.1.S1_at--315--6831Chr03:2692670..2692694 (25 bp)
GTTTCGGACTTCACCCGGCATAAGA
LOC_Os03g05480
Os.25045.1.S1_at--438--7751Chr03:2692532..2692556 (25 bp)
GGTGTTGTTCTAGCGACCTATAGCA
LOC_Os03g05480
Target Sequence 
GATTATTGCCGCATGACATTCAAGAACCGAGCTGAGCTTTCTGTTCATAAAAAGAACACATGCACGGTCAAGTCATGCGG
CAGACATTTCAGATCCCACAAGTATNTGAGGCGCCACCAGAGCATTCACAATGATGATATGCCATACAAGTGTCCATGGG
AGGGTTGCAGTATGGCTTTCAAGTGGTCATGGGATCGGGGTGAGCATTTCCAAGTCCATGCTGGCAAAAGNCCTTATAAA
TGCACAACACCTGGGTGCAGCAAGATATACAAGTTTGTTTCGGACTTCACCCGGCATAAGAGGAGGTGCAAACCTCAGAG
GTAAAAGCTTGTGTGATACTACAGATTTAGGATAGGAGTAAAAATCTTGTACTTGCTACTGTAGATGTTTTTTTTATTTA
TTTGCTGGATGATNGGTGTTGTTCTAGCGACCTATAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis