Browse Element(s) Details


Os.25065.1.S1_a_at

Description gb:AK073454.1
DB_XREF= gi:32983477
TID=Os.25065.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0454H12.25 (P0454H12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042J02, full insert sequence.
FL= gb:AK073454.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4392211/11Exosome complex exonuclease RRP4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43910Os.8374.1.S1_at8/114+25794337..25796955Auxin response factor 16, putative, expressed
LOC_Os04g43916Os.22889.1.S1_s_at11/114+25804858..2581542224 kDa vacuolar protein, putative, expressed
LOC_Os04g43922Os.25065.1.S1_a_at11/114+25817747..25822362Exosome complex exonuclease RRP4, putative, expressed
LOC_Os04g43930NANA4+25828722..25829282retrotransposon protein, putative, unclassified
LOC_Os04g43940Os.46862.1.S1_at1/114+25831972..25833398hypothetical protein
LOC_Os04g43940OsAffx.31487.2.S1_at1/114+25831972..25833398hypothetical protein
LOC_Os04g43950OsAffx.22385.1.S1_x_at5/114+25833742..25838154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43950OsAffx.20329.1.S1_at3/114+25833742..25838154retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43960NANA4+25838705..25839190transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g43970Os.28943.1.S1_x_at3/114+25842288..25844816retrotransposon protein, putative, unclassified
LOC_Os04g43980NANA4+25845502..25851463retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25065.1.S1_a_at--635--951Chr04:25818228..25818252 (25 bp)
AGGAAACATATTTGCCGGCTTGCCA
LOC_Os04g43922
Os.25065.1.S1_a_at--470--9211Chr04:25818208..25818232 (25 bp)
TGCCAATGCTGTACGTGTGCTTTCA
LOC_Os04g43922
Os.25065.1.S1_a_at--526--10531Chr04:25818187..25818211 (25 bp)
TTCAGCTCTGGGTTTCACTTTGACA
LOC_Os04g43922
Os.25065.1.S1_a_at--952--2371Chr04:25818057..25818081 (25 bp)
AAACGTCGAGCTGATCTGTTGCGAA
LOC_Os04g43922
Os.25065.1.S1_a_at--907--5551Chr04:25817969..25817993 (25 bp)
GAAAGCCTGATAAGTGCCATCGTAC
LOC_Os04g43922
Os.25065.1.S1_a_at--1016--7271Chr04:25817956..25817980 (25 bp)
GTGCCATCGTACTCTGCCATAGAGA
LOC_Os04g43922
Os.25065.1.S1_a_at--812--4431Chr04:25817941..25817965 (25 bp)
GCCATAGAGATCCAACTGTTTTCAG
LOC_Os04g43922
Os.25065.1.S1_a_at--638--6811Chr04:25817924..25817948 (25 bp)
GTTTTCAGATCTACGGTGCTTGCAT
LOC_Os04g43922
Os.25065.1.S1_a_at--16--7571Chr04:25817850..25817874 (25 bp)
GGGCCTCATCTATGTTAAATCACAT
LOC_Os04g43922
Os.25065.1.S1_a_at--149--2531Chr04:25817825..25817849 (25 bp)
AACTATTGATGTACGTTTGACGCTT
LOC_Os04g43922
Os.25065.1.S1_a_at--450--1971Chr04:25817782..25817806 (25 bp)
ACTGCATACTCCCTTTCTTGAAAAT
LOC_Os04g43922
Target Sequence 
AGGAAACATATTTGCCGGCTTGCCAATGCTGTACGTGTGCTTTCAGCTCTGGGTTTCACTTTGACAGTTGAACTGATAAT
TGAGACTGCTGAAGCAAGTGTATCATCAAATATCGAGATAAACAACATGCTTGGGGCTGAATTTTATGTCCAGACAGCAG
AGAGAGAGGTAAAACGTCGAGCTGATCTGTTGCGAAAGAAAAGTGGAGCAAGATAAAATCTGCTGATCCTATGTAAAGAT
GCCTAAACGTGTACAAGAAGAAAGCCTGATAAGTGCCATCGTACTCTGCCATAGAGATCCAACTGTTTTCAGATCTACGG
TGCTTGCATTTGATGATAGTGCTAGAAATGGCAAAATGCTGGGCTTGCAGTGCTGGAGGGGCCTCATCTATGTTAAATCA
CATAACTATTGATGTACGTTTGACGCTTTTTTTTTTGAATTGTATTACTGCATACTCCCTTTCTTGAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25065.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis