Browse Element(s) Details


Os.25190.1.A1_x_at

Description gb:AK066662.1
DB_XREF= gi:32976680
TID=Os.25190.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071A17, full insert sequence.
FL= gb:AK066662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3912011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein
LOC_Os07g39100OsAffx.16626.1.S1_at11/117+23430025..23430687hypothetical protein
LOC_Os07g39110Os.55217.1.S1_at11/117+23431681..23433157expressed protein
LOC_Os07g39120Os.25190.1.A1_x_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120Os.25190.1.A1_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120OsAffx.16627.1.S1_at9/117+23436812..23439851hypothetical protein
LOC_Os07g39130NANA7+23441148..23441426hypothetical protein
LOC_Os07g39140OsAffx.28819.1.S1_at11/117+23442507..23442845hypothetical protein
LOC_Os07g39150OsAffx.32166.1218.S1_x_at9/117+23454664..23456106hypothetical protein
LOC_Os07g39170NANA7+23461676..23466848retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25190.1.A1_x_at--317--5771Chr07:23439740..23439764 (25 bp)
GACGATAGGTGTGACGACCTCCGCA
LOC_Os07g39120
Os.25190.1.A1_x_at--361--1872Chr09:12341735..12342012 (25 bp)
ACGACCTCCGCAACGACGAGGAGTT
NONE
Os.25190.1.A1_x_at--930--8031Chr07:23439708..23439732 (25 bp)
GGAGTTCCAGCGTGTCATGGACAAC
LOC_Os07g39120
Os.25190.1.A1_x_at--1125--10111Chr07:23439579..23439689 (25 bp)
TATGATCCCACAAGAGATGACCTCA
LOC_Os07g39120
Os.25190.1.A1_x_at--339--6311Chr07:23439564..23439588 (25 bp)
GATGACCTCAGGATCAGCACTGACC
LOC_Os07g39120
Os.25190.1.A1_x_at--1077--4331Chr07:23439109..23439133 (25 bp)
GCCAGTCCCGGTTAGCAACTGGGAT
LOC_Os07g39120
Os.25190.1.A1_x_at--788--852Chr11:24207508..24207528 (21 bp)
ATGGCAGCGCCAGTCCTGGTTAGCC
NONE
Os.25190.1.A1_x_at--256--3431Chr07:23439063..23439087 (25 bp)
CAGTCCTGGTTAGCCACTGTTTTTT
LOC_Os07g39120
Os.25190.1.A1_x_at--369--103310Chr12:21111615..21111666 (25 bp)
TTTCATTATTTTTTCCCAAATCGAG
NONE
Os.25190.1.A1_x_at--914--10171Chr07:23439028..23439052 (25 bp)
TTTCCCAAATCGAGTTGGAACTACA
LOC_Os07g39120
Os.25190.1.A1_x_at--658--6032Chr08:3491893..3491916 (24 bp)
GAGTTGGAACTACACAAATCTCTTC
NONE
Target Sequence 
GACGATAGGTGTGACGACCTCCGCAACGACGAGGAGTTCCAGCGTGTCATGGACAACGTNGTCTTCGGCCGGGGTTATGA
TCCCACAAGAGATGACCTCAGGATCAGCACTGACCCTANTGCGATGGTCGAGCTCATAGAGTNCTACCACNAGATGGGTC
TGATAGAAGGTGAATGGGTGGCTTANAGCTTCTTGGAGGGGNNGTGGATGGGGTGGAATTGGAGGATAAGACGGCGATGG
ATGAGAAGCCAGTGATAGAGGAGGATGATNCACTGGTAGAGAAAGGGTTTTTCCTCCCGGTTNGTAACCCCCTATACTTC
CGGTTTTGCAATCGGGAGTAGCAATCCGGGACTAAAGATACTCATCTTTAGTCCCGGGTGAAATAACCGGGACTAAAAAT
GTATCTTTAGTCCCGGTTNGTATCACCAACCNGGATTAAAAATGGCGATGGCANCGCCAGTCCCGGTTAGCAACTGGGAT
TANAGATGGCGATGGCAGCGCCAGTCCTGGTTAGCCACTGTTTTTTTTCATTATTTTTTCCCAAATCGAGTTGGAACTAC
ACAAATCTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25190.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis