Browse Element(s) Details


Os.25215.1.A1_at

Description gb:AK100737.1
DB_XREF= gi:32985946
TID=Os.25215.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118C14, full insert sequence.
FL= gb:AK100737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0427011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04210OsAffx.3127.1.S1_at11/113+1915380..1916381IQ calmodulin-binding motif family protein, expressed
LOC_Os03g04220Os.14372.1.S1_at11/113+1917326..1918802Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g04230NANA3+1924613..1926500transposon protein, putative, unclassified
LOC_Os03g04240Os.15269.1.S1_at11/113+1927427..1928654Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os03g04250Os.23119.1.S1_at9/113+1931387..1932563Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os03g04260Os.2614.1.S1_at11/113+1933783..1935070Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g04270Os.25215.1.A1_at11/113+1935970..1938874Leucine Rich Repeat family protein, expressed
LOC_Os03g04290Os.35344.3.S1_x_at10/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290Os.35344.18.S1_x_at9/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.2.S1_s_at8/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.3.S1_x_at6/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.5.S1_x_at3/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04290OsAffx.22940.1.S1_s_at2/113+1942665..1946274Transposable element protein, putative, MuDR
LOC_Os03g04300Os.26758.1.A1_a_at11/113+1949407..1958621Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os03g04310Os.5860.1.S1_at11/113+1962636..1964778basic helix-loop-helix, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25215.1.A1_at--1035--10591Chr03:1936460..1936484 (25 bp)
TTCGAAGCCGTCCATTCTTACATAT
LOC_Os03g04270
Os.25215.1.A1_at--436--10831Chr03:1936402..1936426 (25 bp)
TTGGGATAGATCCTCCGATTGGTAT
LOC_Os03g04270
Os.25215.1.A1_at--107--7771Chr03:1936329..1936353 (25 bp)
GGTGAACCTGTATCTGACACTGAAA
LOC_Os03g04270
Os.25215.1.A1_at--98--8291Chr03:1936287..1936311 (25 bp)
GGCATCACTCTTTAAGGTTTCTTGA
LOC_Os03g04270
Os.25215.1.A1_at--584--7871Chr03:1936272..1936296 (25 bp)
GGTTTCTTGACCCACAATAATCTCC
LOC_Os03g04270
Os.25215.1.A1_at--158--1571Chr03:1936182..1936206 (25 bp)
AGCTATTGTGTGATTGTCTCTACCA
LOC_Os03g04270
Os.25215.1.A1_at--293--8891Chr03:1936155..1936179 (25 bp)
TGAGGTATTTTCTTGCGGTGTATGC
LOC_Os03g04270
Os.25215.1.A1_at--515--2371Chr03:1936124..1936148 (25 bp)
AAACCTATCCGTTGCTGTATACTTG
LOC_Os03g04270
Os.25215.1.A1_at--114--6591Chr03:1936059..1936083 (25 bp)
GATTCCCTGGGCTTATGTATGTACA
LOC_Os03g04270
Os.25215.1.A1_at--246--9891Chr03:1936038..1936062 (25 bp)
TACATTGTTTGCTTTCCTGACCTGA
LOC_Os03g04270
Os.25215.1.A1_at--477--10291Chr03:1935996..1936020 (25 bp)
TTTCCAGGTTTCAGCTTTTCTCATA
LOC_Os03g04270
Target Sequence 
TTCGAAGCCGTCCATTCTTACATATGGCTTGCCGTGGTGAAGAATTGGGGACTTTCAATTGGGATAGATCCTCCGATTGG
TATCGACATGATGATGATGATCTTGATGAGCTTGAACAGTGGATTTTGAATGGTGAACCTGTATCTGACACTGAAACCAT
CACTGAAGAATAAGGCATCACTCTTTAAGGTTTCTTGACCCACAATAATCTCCCTGTTCTAGCCTGCTAGTGTTCATCTC
CTGTTGTACCTCCACCGTTTCATTTTTCTTTCTTATAAAGCTATTGTGTGATTGTCTCTACCAGTTGAGGTATTTTCTTG
CGGTGTATGCATATGCAAACCTATCCGTTGCTGTATACTTGTATCACGCAACACGCATACACGATATGCATGTTGCATTC
AGATTCCCTGGGCTTATGTATGTACATTGTTTGCTTTCCTGACCTGATGTTGTACTGGTATCTTTTTCCAGGTTTCAGCT
TTTCTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25215.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis