Browse Element(s) Details


Os.25247.1.A1_at

Description gb:AK064176.1
DB_XREF= gi:32974194
TID=Os.25247.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25247 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-A10, full insert sequence.
FL= gb:AK064176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g637802/11Nsp1-like C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63750OsAffx.18122.1.S1_x_at2/111+37307938..37308616hypothetical protein
LOC_Os01g63760Os.10827.1.S1_x_at9/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63760Os.46055.2.S1_x_at4/111+37308980..37312768transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g63770Os.6258.1.S1_a_at11/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63770OsAffx.7026.1.S1_x_at2/111+37325187..37331492AUX1-like permease, putative, expressed
LOC_Os01g63780OsAffx.11715.1.S1_at10/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63780Os.25247.1.A1_at2/111+37332994..37338205Nsp1-like C-terminal region family protein, expressed
LOC_Os01g63790NANA1+37338746..37340164expressed protein
LOC_Os01g63800Os.16802.1.S1_a_at11/111+37343933..37344897Pleckstrin homology domain-containing protein 1, putative, expressed
LOC_Os01g63810Os.21123.1.S1_at11/111+37348393..37350692Starch binding domain containing protein, expressed
LOC_Os01g63820Os.37564.2.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.54436.1.S1_at11/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.1.S1_x_at10/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63820Os.37564.3.S1_at9/111+37350544..37358309Double-stranded RNA binding motif family protein, expressed
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25247.1.A1_at--827--3331Chr01:37333101..37333125 (25 bp)
CACTGTTCCTCTCATTCAAGTACAT
LOC_Os01g63780
Os.25247.1.A1_at--863--2491Chr01:37333016..37333040 (25 bp)
AACAGTCGCGTACATTGGCTTCAGC
LOC_Os01g63780
Os.25247.1.A1_at--223--5471Chr01:37332984..37333008 (25 bp)
GAACTGTTTCAACTCACTTTGGTCT
NONE
Os.25247.1.A1_at--711--8291Chr01:37332941..37332965 (25 bp)
GGCTTTGCGAGATACCGTTCATTAT
NONE
Os.25247.1.A1_at--70--1771Chr01:37332838..37332862 (25 bp)
ACCTGCATCAATTGAGCTACGCCTT
NONE
Os.25247.1.A1_at--758--10431Chr01:37332815..37332839 (25 bp)
TTATGAGCTTCTTACCAGGGACCAG
NONE
Os.25247.1.A1_at--813--8091Chr01:37332797..37332821 (25 bp)
GGACCAGCGGATATCTTGAGCCTTT
NONE
Os.25247.1.A1_at--159--8932Chr05:23239525..23239632 (24 bp)
TGAGCCTTTTCTTGCGATCCTGTAA
NONE
Os.25247.1.A1_at--850--551Chr01:37332765..37332789 (25 bp)
ATCCTGTAATCTCAAATCGCTGTCC
NONE
Os.25247.1.A1_at--500--4731Chr01:37332747..37332771 (25 bp)
GCTGTCCTCCAGTTGCACTAGAAAG
NONE
Os.25247.1.A1_at--792--731Chr01:37332671..37332695 (25 bp)
ATGTTCGCCTAACTACTTGTGCATG
NONE
Target Sequence 
CACTGTTCCTCTCATTCAAGTACATGATGTACCGAACTGATGTTATTCGTTGGGATTTTAACTGCTGATGTTAACAATGC
CTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCACTTTGGTCTTTGGACGAGGAAACAAGA
GGCTTTGCGAGATACCGTTCATTATTGGTTCCAGGTGTGTTCAGATCTGTTGAGCTGAAAAGTAGATGCTATATGATGCG
TTGGGTGGGCTAAGTACCTGGCTACCTGCATCAATTGAGCTACGCCTTATGAGCTTCTTACCAGGGACCAGCGGATATCT
TGAGCCTTTTCTTGCGATCCTGTAATCTCAAATCGCTGTCCTCCAGTTGCACTAGAAAGCTTCGGGGTCCTGTAAGATTG
CACGATTTGCATTTCTAAACTACATGCTATATGTTCGCCTAACTACTTGTGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25247.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis