Browse Element(s) Details


Os.25250.1.S1_at

Description gb:AK100670.1
DB_XREF= gi:32985879
TID=Os.25250.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112J15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112J15, full insert sequence.
FL= gb:AK100670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4240611/11DEAD/DEAH box helicase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42370Os.27412.1.S1_at11/112+25482215..25485863Leucine Rich Repeat family protein, expressed
LOC_Os02g42380Os.51204.1.S1_at11/112+25491456..25492560TCP family transcription factor containing protein, expressed
LOC_Os02g42390OsAffx.12455.1.S1_at11/112+25498778..25500043hypothetical protein
LOC_Os02g42400OsAffx.24687.1.S1_at9/112+25502534..25503056BolA like protein, putative
LOC_Os02g42400Os.37276.1.S1_at2/112+25502534..25503056BolA like protein, putative
LOC_Os02g42406Os.25250.1.S1_at11/112+25505013..25507718DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g42412Os.51832.1.S1_at11/112+25508640..25509778expressed protein
LOC_Os02g42420NANA2+25512463..25516385retrotransposon protein, putative, unclassified
LOC_Os02g42430NANA2+25517597..25518511GRAM domain containing protein
LOC_Os02g42440Os.8962.1.S1_at11/112+25521815..25523187GRAM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25250.1.S1_at--314--2711Chr02:25505567..25505591 (25 bp)
AAGCTTGCAAGGTCAACTGTCTTGA
LOC_Os02g42406
Os.25250.1.S1_at--509--9711Chr02:25505305..25505329 (25 bp)
TCAAGCCATGTGAATTCACCGAAGG
LOC_Os02g42406
Os.25250.1.S1_at--200--10491Chr02:25505291..25505315 (25 bp)
TTCACCGAAGGGAAGCTTCTTGTTC
LOC_Os02g42406
Os.25250.1.S1_at--312--5391Chr02:25505280..25505304 (25 bp)
GAAGCTTCTTGTTCATAAGGAGGAA
LOC_Os02g42406
Os.25250.1.S1_at--248--5211Chr02:25505225..25505249 (25 bp)
GAATTCATCGAATGGCATTTTCATA
LOC_Os02g42406
Os.25250.1.S1_at--355--8491Chr02:25505213..25505237 (25 bp)
TGGCATTTTCATAGATTGTATTTTC
LOC_Os02g42406
Os.25250.1.S1_at--825--8191Chr02:25505136..25505160 (25 bp)
GGAATGGTTGTTATCCTGGAAACTT
LOC_Os02g42406
Os.25250.1.S1_at--540--6051Chr02:25505099..25505123 (25 bp)
GAGTTGGTACTCCTCGGATCTATTA
LOC_Os02g42406
Os.25250.1.S1_at--1015--6991Chr02:25505093..25505117 (25 bp)
GTACTCCTCGGATCTATTATATATT
LOC_Os02g42406
Os.25250.1.S1_at--669--4311Chr02:25505058..25505082 (25 bp)
CCTTCCTATGGAGATGTACTGTAAT
LOC_Os02g42406
Os.25250.1.S1_at--246--7071Chr02:25505038..25505062 (25 bp)
GTAATGTGTAAAATGACTCCAAGAA
LOC_Os02g42406
Target Sequence 
AAGCTTGCAAGGTCAACTGTCTTGAAAAAGTTCAAGGATGGTGAATTNAGAGTTCTAGTTACAAATGAGTTGTCTGCCAG
AGGACTGGATGTGCCAGAATGTGACCTTGTGATTAATNTGGATCTTCCAACAGNACTCNACACACTATGCCCACAGAGCT
GGCCGAACTGGCCGTNTAGGGCGGAAAGGAACTGTGGTCNCAATATGTGAAGAAACCGAAACATTTGTTGTAAGGAAAAT
GCGCAAGCAATTAGCTGTACCCATCAAGCCATGTGAATTCACCGAAGGGAAGCTTCTTGTTCATAAGGAGGAAGATGTAG
AGTAAACTNTGCATTGTTCAAATGAATTCATCGAATGGCATTTTCATAGATTGTATTTTCTTTAAATGTTGTCAATTAAT
GTTTTTTGGTCNANNCAAAGATTNAGATAGAAGGAATGGTTGTTATCCTGGAAACTTTTTCCTCNCGGGGAGTTGGTACT
CCTCGGATCTATTATATATTTCTGTTGTCNCCTTCCTATGGAGATGTACTGTAATGTGTAAAATGACTCCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis