Browse Element(s) Details


Os.25318.1.A1_at

Description gb:CA760602
DB_XREF= gi:25804641
DB_XREF=BR060006A20F10.ab1
CLONE=BR060006A20F10.ab1
TID=Os.25318.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25318 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g426349/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42600Os.38233.1.S2_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S1_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S2_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42610Os.8398.1.S1_a_at11/114+24988714..24994819expressed protein
LOC_Os04g42620Os.15713.1.S1_a_at11/114+24998777..25000582Leucine Rich Repeat family protein, expressed
LOC_Os04g42634OsAffx.4060.1.S1_at11/114+25006094..25009700hypothetical protein
LOC_Os04g42634OsAffx.4061.1.S1_at10/114+25006094..25009700hypothetical protein
LOC_Os04g42634Os.25318.1.A1_at9/114+25006094..25009700hypothetical protein
LOC_Os04g42650Os.50505.2.S1_at11/114+25013340..25015569expressed protein
LOC_Os04g42670Os.49610.1.S1_at11/114+25025431..25027439F-box domain containing protein, expressed
LOC_Os04g42680OsAffx.14244.1.S1_at10/114+25030836..25032080hypothetical protein
LOC_Os04g42690Os.20755.1.S1_at11/114+25032328..25034055UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25318.1.A1_at--520--10211NONE
TATTTTCACCACCACGATAATGTAA
NONE
Os.25318.1.A1_at--1105--3031Chr04:25007725..25007749 (25 bp)
AATCCGATGGCATAGAGTAGCGACT
LOC_Os04g42634
Os.25318.1.A1_at--233--1651Chr04:25007707..25007731 (25 bp)
AGCGACTAATCCATACTATTTCCAA
LOC_Os04g42634
Os.25318.1.A1_at--637--2671Chr04:25007611..25007635 (25 bp)
AAGCGGCATGCTAACTAGGTACATA
LOC_Os04g42634
Os.25318.1.A1_at--1150--7691Chr04:25007568..25007592 (25 bp)
GGGTCATCTGTTACATTATAGTTCC
LOC_Os04g42634
Os.25318.1.A1_at--243--3171Chr04:25007513..25007537 (25 bp)
AATTGCATTTGTTACTATCTTTGAT
LOC_Os04g42634
Os.25318.1.A1_at--974--7111Chr04:25007484..25007508 (25 bp)
GTCAGTAATGGGAATCTTTGCGCAG
LOC_Os04g42634
Os.25318.1.A1_at--267--10291Chr04:25007468..25007492 (25 bp)
TTTGCGCAGAAAGTACTAGGTGTGG
LOC_Os04g42634
Os.25318.1.A1_at--80--6431Chr04:25007431..25007455 (25 bp)
GATCATTAGTACTTTCCGTTTATAG
LOC_Os04g42634
Os.25318.1.A1_at--237--5891NONE
GAGCAGTTTTACACAAAGTCAATTT
NONE
Os.25318.1.A1_at--109--9611Chr04:25007304..25007328 (25 bp)
TCATAATGTATTATGTGCTTCCCTC
LOC_Os04g42634
Target Sequence 
TATTTTCACCACCACGATAATGTAATCATTTATACTATTAATACAATTTTATCAGTATCTACAAGTTGTACATTAGAAGA
TGAATGCATTTACTATAAAACAGGACAATCCGATGGCATAGAGTAGCGACTAATCCATACTATTTCCAAAATAAAACGAT
CGATTTGGTTGAATATTATTAAAACCATTTAAAATATATTGGTTATGTTTTATATGAATTAAGCGGCATGCTAACTAGGT
ACATATAGAAATACATGTAGGGGTCATCTGTTACATTATAGTTCCTATTTGTGATAAATATTTGGATGTTTTGATAATTG
CATTTGTTACTATCTTTGATTATAGTCAGTAATGGGAATCTTTGCGCAGAAAGTACTAGGTGTGGAGAAATAGAGAGGGG
ATCATTAGTACTTTCCGTTTATAGAACAAAGAGCAGTTTTACACAAAGTCAATTTTATTCAAATTGAAAAGTTGTTATGA
TAGTGGTATTGGTATAAATTAATTTATGTATTTTCATAACTAGGAACTTCATAATGTATTATGTGCTTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25318.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis