Browse Element(s) Details


Os.25403.1.S1_at

Description gb:AK059112.1
DB_XREF= gi:32969130
TID=Os.25403.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25403 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-022-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E03, full insert sequence.
FL= gb:AK059112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2455011/11ATP-binding region, ATPase-like domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g24520Os.12760.2.S1_at11/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24520Os.12760.1.S1_x_at10/114+14037914..14043157Mitochondrial ribosomal protein L51/S25/CI-B8 domain containing protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_x_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24530OsAffx.13955.1.S1_at11/114+14047915..14050020AMP-binding enzyme family protein, expressed
LOC_Os04g24540NANA4+14053283..14053756hypothetical protein
LOC_Os04g24550OsAffx.26130.1.S1_x_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550OsAffx.26130.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24550Os.25403.1.S1_at11/114+14064018..14070352ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os04g24560OsAffx.26131.1.S1_at11/114+14074536..14074805hypothetical protein
LOC_Os04g24560OsAffx.26131.1.S1_x_at11/114+14074536..14074805hypothetical protein
LOC_Os04g24570OsAffx.17830.2.S1_x_at1/114+14081675..14087934retrotransposon protein, putative, unclassified
LOC_Os04g24580NANA4+14092802..14095753retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25403.1.S1_at--962--91Chr04:14070056..14070080 (25 bp)
ATTCCCCTATGTTTAGTGTTGATAG
LOC_Os04g24550
Os.25403.1.S1_at--882--271Chr04:14070077..14070101 (25 bp)
ATAGGTAGTTCCATCATCTCACTTC
LOC_Os04g24550
Os.25403.1.S1_at--863--1271Chr04:14070103..14070127 (25 bp)
AGATCACTTCCAGCATTGTGTACAG
LOC_Os04g24550
Os.25403.1.S1_at--989--1151Chr04:14070215..14070239 (25 bp)
AGTCATTTCGTTCGTTGTGTTCAAT
LOC_Os04g24550
Os.25403.1.S1_at--302--6731Chr04:14070233..14070257 (25 bp)
GTTCAATGTTACACGTGGTTGTGTC
LOC_Os04g24550
Os.25403.1.S1_at--659--7511Chr04:14070247..14070271 (25 bp)
GTGGTTGTGTCAAATCAGTCTCGAT
LOC_Os04g24550
Os.25403.1.S1_at--1012--1151Chr04:14070263..14070287 (25 bp)
AGTCTCGATTTTTTGTGCCTGGGCT
LOC_Os04g24550
Os.25403.1.S1_at--213--7291Chr04:14070277..14070301 (25 bp)
GTGCCTGGGCTTTTCATCCTCTTTA
LOC_Os04g24550
Os.25403.1.S1_at--444--571Chr04:14070292..14070316 (25 bp)
ATCCTCTTTATCTCGAGTCTGACAG
LOC_Os04g24550
Os.25403.1.S1_at--172--471Chr04:14070301..14070325 (25 bp)
ATCTCGAGTCTGACAGTGAAACAGT
LOC_Os04g24550
Os.25403.1.S1_at--848--5531Chr04:14070318..14070342 (25 bp)
GAAACAGTGTTAATCAACGGCCGTA
LOC_Os04g24550
Target Sequence 
ATTCCCCTATGTTTAGTGTTGATAGGTAGTTCCATCATCTCACTTCCAGATCACTTCCAGCATTGTGTACAGGCAAGGAA
TGCCAATAAAGGCTACTGTTAGTGATCGGTATGTGAGTTTGTAGGTAAAAACACTCGCTAGGCCTTTTAATACTTAATTA
GTCATTTCGTTCGTTGTGTTCAATGTTACACGTGGTTGTGTCAAATCAGTCTCGATTTTTTGTGCCTGGGCTTTTCATCC
TCTTTATCTCGAGTCTGACAGTGAAACAGTGTTAATCAACGGCCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis