Browse Element(s) Details


Os.25411.1.A1_at

Description gb:AK064584.1
DB_XREF= gi:32974602
TID=Os.25411.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-F05, full insert sequence.
FL= gb:AK064584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2186011/11transposon protein, putative, Pong sub-class, expressed
LOC_Os08g129509/11transposon protein, putative, Pong sub-class
LOC_Os08g446906/11transposon protein, putative, Pong sub-class
LOC_Os02g267402/11transposon protein, putative, Pong sub-class, expressed
LOC_Os08g359201/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21820Os.27099.1.S1_at11/114+12339714..12344921Protein kinase domain containing protein, expressed
LOC_Os04g21830NANA4+12350982..12352670hypothetical protein
LOC_Os04g21840OsAffx.3849.1.S1_at11/114+12354545..12354991hypothetical protein
LOC_Os04g21850NANA4+12357314..12357610hypothetical protein
LOC_Os04g21860Os.25411.1.A1_at11/114+12360704..12362603transposon protein, putative, Pong sub-class, expressed
LOC_Os04g21870NANA4+12363087..12364439transposon protein, putative, Pong sub-class
LOC_Os04g21880OsAffx.26088.1.S1_at10/114+12367980..12370159hypothetical protein
LOC_Os04g21890OsAffx.3850.1.S1_at11/114+12371400..12374198NB-ARC domain containing protein, expressed
LOC_Os04g21900OsAffx.13914.1.S1_at11/114+12375742..12378182hypothetical protein
LOC_Os04g21910OsAffx.13915.1.S1_at11/114+12381592..12383153pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25411.1.A1_at--377--10313Chr08:27952977..27953001 (25 bp)
TTTCTGAATCTGGTGCATATACATC
LOC_Os08g44690
Os.25411.1.A1_at--73--7334Chr08:27952989..27953013 (25 bp)
GTGCATATACATCATCATCCAACCA
LOC_Os08g44690
Os.25411.1.A1_at--113--5553Chr08:27953015..27953039 (25 bp)
GAAACTGAGGAGGAGACCAGCCGAA
LOC_Os08g44690
Os.25411.1.A1_at--1125--5833Chr08:27953029..27953053 (25 bp)
GACCAGCCGAAAAGAGAAGCGTCCT
LOC_Os08g44690
Os.25411.1.A1_at--1014--10252Chr04:12362193..12362217 (25 bp)
TTTGTTCTCTTCAACGAAGCTGTAA
LOC_Os04g21860
Os.25411.1.A1_at--364--1534Chr08:22522015..22522045 (25 bp)
AGCAGTGCTGAAATCTGCAGAAGCA
LOC_Os08g35920
Os.25411.1.A1_at--27--5393Chr08:27953198..27953222 (25 bp)
GAAGCAACCACCAAATCAGCGGAAG
LOC_Os08g44690
Os.25411.1.A1_at--686--2392Chr04:12362358..12362382 (25 bp)
AAACTCAAGAGGCATGAAGCTGTCC
LOC_Os04g21860
Os.25411.1.A1_at--460--5415Chr08:27953156..27953345 (25 bp)
GAAGCTGTCCTCGAAAAGCTAGCTA
LOC_Os08g44690
Os.25411.1.A1_at--392--6993Chr08:27953386..27953410 (25 bp)
GTACCCCTAGTACTTAGTGTGTCAC
NONE
Os.25411.1.A1_at--141--1113Chr08:27953401..27953425 (25 bp)
AGTGTGTCACTGTTTCATTAAGTTT
NONE
Target Sequence 
TTTCTGAATCTGGTGCATATACATCATCATCCAACCAAGAAACTGAGGAGGAGACCAGCCGAAAAGAGAAGCGTCCTGAA
GGGCAGAAAANAGCCAAAGCCAAGCTTAAAGGGAAAGGAAAAAAACCTGCACCGTCTCCTTTGGGGGACCAGCCATCTCA
AGATTTTGTTCTCTTCAACGAAGCTGTAAAATTGAGAGCAGAAGCAGTGCTGAAATCTGCAGAAGCAACCACCAAATCAG
CGGAAGCAAAGAAGGAACAAACTAGGATGGAGAAGTATCAGACATATTTAAAGTTGTTGGACAAAGACACTGCCAATTTT
AGTGATGCAAAACTCAAGAGGCATGAAGCTGTCCTCGAAAAGCTAGCTACAGAACTTGCAGAAGAATAGAAGATCCCTAA
GTTATGTNTGTACCCCTAGTACTTAGTGTGTCACTGTTTCATTAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25411.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis