Browse Element(s) Details


Os.25436.1.S1_at

Description gb:AK059440.1
DB_XREF= gi:32969458
TID=Os.25436.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25436 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H06, full insert sequence.
FL= gb:AK059440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0553011/11small nuclear ribonucleoprotein E, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05520Os.49830.1.S1_at11/118+2942209..2945028Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g05530Os.25436.1.S1_at11/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05530OsAffx.16839.1.S1_s_at9/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05540OsAffx.5717.1.S1_at11/118+2962018..2962695expressed protein
LOC_Os08g05550Os.36897.1.A1_at11/118+2962962..2965420hypothetical protein
LOC_Os08g05560Os.53532.1.S1_at11/118+2966257..2970070Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g05570Os.10774.1.S1_at10/118+2971047..2975917Monodehydroascorbate reductase, chloroplast precursor, putative, expressed
LOC_Os08g05580OsAffx.16840.1.S1_at11/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05580OsAffx.17990.1.S1_at1/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25436.1.S1_at--537--10551Chr08:2961183..2961207 (25 bp)
TTCTCCCCAAGGTTGGCGTTTGTGA
LOC_Os08g05530
Os.25436.1.S1_at--1097--3191Chr08:2961190..2961214 (25 bp)
CAAGGTTGGCGTTTGTGACTTTGTG
LOC_Os08g05530
Os.25436.1.S1_at--874--9371Chr08:2961215..2961239 (25 bp)
TCGATTAGTCCCGTGATACTTTGTA
LOC_Os08g05530
Os.25436.1.S1_at--2--1131Chr08:2961221..2961245 (25 bp)
AGTCCCGTGATACTTTGTACTCCAT
LOC_Os08g05530
Os.25436.1.S1_at--149--7411Chr08:2961227..2961251 (25 bp)
GTGATACTTTGTACTCCATCTAGAT
LOC_Os08g05530
Os.25436.1.S1_at--174--3691Chr08:2961233..2961257 (25 bp)
CTTTGTACTCCATCTAGATAATCAG
LOC_Os08g05530
Os.25436.1.S1_at--854--8731Chr08:2961308..2961332 (25 bp)
TGTAACGGCTGTTAGCAACCTATGA
LOC_Os08g05530
Os.25436.1.S1_at--701--5151Chr08:2961322..2961346 (25 bp)
GCAACCTATGAACTCTGTGAACTCT
LOC_Os08g05530
Os.25436.1.S1_at--540--5471Chr08:2961331..2961355 (25 bp)
GAACTCTGTGAACTCTAGGCAAGGT
LOC_Os08g05530
Os.25436.1.S1_at--95--3891Chr08:2961336..2961360 (25 bp)
CTGTGAACTCTAGGCAAGGTTGTTG
LOC_Os08g05530
Os.25436.1.S1_at--146--4291Chr08:2961414..2961438 (25 bp)
CCTGCTCACTTATAACACGGACAAT
LOC_Os08g05530
Target Sequence 
TTCTCCCCAAGGTTGGCGTTTGTGACTTTGTGTCGATTAGTCCCGTGATACTTTGTACTCCATCTAGATAATCAGAGAAT
GAAATGCATGTAGCATGTCATCGTCATCGTCCTCAATTGAGGATATGTAACGGCTGTTAGCAACCTATGAACTCTGTGAA
CTCTAGGCAAGGTTGTTGAGATAATGAGTTGCTCACTTGTGTGTTTAAGATTCCTGATCCCGTGAATCAATCCTGCTCAC
TTATAACACGGACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis