Browse Element(s) Details


Os.10774.1.S1_at

Description gb:AK099848.1
DB_XREF= gi:32985057
TID=Os.10774.1
CNT=18
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.10774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109H24, full insert sequence.
FL= gb:AK099848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0557010/11Monodehydroascorbate reductase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05530Os.25436.1.S1_at11/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05530OsAffx.16839.1.S1_s_at9/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05540OsAffx.5717.1.S1_at11/118+2962018..2962695expressed protein
LOC_Os08g05550Os.36897.1.A1_at11/118+2962962..2965420hypothetical protein
LOC_Os08g05560Os.53532.1.S1_at11/118+2966257..2970070Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g05570Os.10774.1.S1_at10/118+2971047..2975917Monodehydroascorbate reductase, chloroplast precursor, putative, expressed
LOC_Os08g05580OsAffx.16840.1.S1_at11/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05580OsAffx.17990.1.S1_at1/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05600OsAffx.16841.1.S1_at11/118+2990687..2992113Major intrinsic protein
LOC_Os08g05610NANA8+2994086..2995489Cytochrome P450 89A2, putative
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10774.1.S1_at--590--1711Chr08:2974717..2974741 (25 bp)
ACCACTGTGTTGAAGCACTCCTAAC
LOC_Os08g05570
Os.10774.1.S1_at--143--2371Chr08:2974751..2974849 (25 bp)
AAAGCCGTATGACTACCTTCCATAT
LOC_Os08g05570
Os.10774.1.S1_at--1076--4851NONE
GCTACCTTCTGGATTGACTCTGATA
NONE
Os.10774.1.S1_at--995--1571Chr08:2975196..2975569 (25 bp)
AGCTCAGAGGAATTTTCGCTTCTTC
LOC_Os08g05570
Os.10774.1.S1_at--179--9351Chr08:2975576..2975600 (25 bp)
TCGCTAAGTCTCAGCCCGTTGTAGA
LOC_Os08g05570
Os.10774.1.S1_at--808--1571Chr08:2975609..2975633 (25 bp)
AGCTCAAAAGTGCAACCTCTGTCGA
LOC_Os08g05570
Os.10774.1.S1_at--914--7891Chr08:2975671..2975695 (25 bp)
GGTTCTTCTGTTTAGCTCTCAAGCA
LOC_Os08g05570
Os.10774.1.S1_at--313--3431Chr08:2975708..2975732 (25 bp)
CAGTTTGTGTCCTGTTACATCTTTT
LOC_Os08g05570
Os.10774.1.S1_at--1015--3031Chr08:2975765..2975789 (25 bp)
AATCCCACGGCATTCGTTTATGCGG
LOC_Os08g05570
Os.10774.1.S1_at--506--10031Chr08:2975804..2975828 (25 bp)
TAGATGTACCTACGTTCGCATTTCC
LOC_Os08g05570
Os.10774.1.S1_at--440--5571Chr08:2975834..2975858 (25 bp)
GAAATAAACTTGGTTGCCCTTTGAG
LOC_Os08g05570
Target Sequence 
ACCACTGTGTTGAAGCACTCCTAACATCACACACAAAGCCGTATGACTACCTTCCATATTTCTATTCAAGAGTTTTTGAG
TACGAAGGAAGTTCAAGGAAAATTTGGTGGCAATTTTACGGTGATAATGTTGGCGAAACAATTGAAGTGGGAAGCTTTGA
ACCAAAGATTGCTACCTTCTGGATTGACTCTGATAGTCGACTGAAGGGTGTTTTCCTTGAGAGTGGTAGCTCAGAGGAAT
TTTCGCTTCTTCCTCAACTCGCTAAGTCTCAGCCCGTTGTAGACAAAGCTAAGCTCAAAAGTGCAACCTCTGTCGAGGAT
GCCTTAGAGATCGCAAGAAGCTCTCTCCACTCTGGTTCTTCTGTTTAGCTCTCAAGCATCTAGAAAAATTCAGTTTGTGT
CCTGTTACATCTTTTAAAACACCGAGACTTCAACAATAATTCTCCACAATCCCACGGCATTCGTTTATGCGGGATTGTAA
AATTCTTAGATGTACCTACGTTCGCATTTCCAATTTGAAATAAACTTGGTTGCCCTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis