Browse Element(s) Details


OsAffx.16841.1.S1_at

Description tigr:9636.m00491
TID=OsAffx.16841.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Major intrinsic protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0560011/11Major intrinsic protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05560Os.53532.1.S1_at11/118+2966257..2970070Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g05570Os.10774.1.S1_at10/118+2971047..2975917Monodehydroascorbate reductase, chloroplast precursor, putative, expressed
LOC_Os08g05580OsAffx.16840.1.S1_at11/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05580OsAffx.17990.1.S1_at1/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05600OsAffx.16841.1.S1_at11/118+2990687..2992113Major intrinsic protein
LOC_Os08g05610NANA8+2994086..2995489Cytochrome P450 89A2, putative
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed
LOC_Os08g05630Os.18267.1.S1_at11/118+3003288..3006183expressed protein
LOC_Os08g05640Os.8813.1.S1_s_at11/118+3007463..3009986pleckstrin homology domain-containing protein, putative, expressed
LOC_Os08g05650Os.25510.1.S1_at11/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05650Os.46700.1.S1_at1/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05660Os.12311.2.S1_at2/118+3016705..3020402LOC548366 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16841.1.S1_at--152--8851Chr08:2991297..2991321 (25 bp)
TGATCTTCACCGTGCTATCAACCAT
LOC_Os08g05600
OsAffx.16841.1.S1_at--192--2331Chr08:2991342..2991366 (25 bp)
AAAGTATCGAGACGCTCCTCGGAAT
LOC_Os08g05600
OsAffx.16841.1.S1_at--418--8211Chr08:2991362..2991386 (25 bp)
GGAATCGCAACATCTGCAGGCTTAG
LOC_Os08g05600
OsAffx.16841.1.S1_at--439--1511Chr08:2991385..2991409 (25 bp)
AGCAGTCACTGTTCTAGTTCTGTCC
LOC_Os08g05600
OsAffx.16841.1.S1_at--104--7671Chr08:2991575..2991599 (25 bp)
GGGATTGTCACCGTGCCAAATGTCG
LOC_Os08g05600
OsAffx.16841.1.S1_at--346--2991Chr08:2991593..2991617 (25 bp)
AATGTCGGCACGGTTGAGGCGTTTT
LOC_Os08g05600
OsAffx.16841.1.S1_at--369--6211Chr08:2991608..2991632 (25 bp)
GAGGCGTTTTTCGTCGAGTTCATAA
LOC_Os08g05600
OsAffx.16841.1.S1_at--637--671Chr08:2991825..2991845 (21 bp)
ATGAACATTCTTGTGGCAGGGCCAT
LOC_Os08g05600
OsAffx.16841.1.S1_at--106--4151Chr08:2992008..2992032 (25 bp)
CGCGGCTATTGCCACAGGGAGATAT
LOC_Os08g05600
OsAffx.16841.1.S1_at--745--8631Chr08:2992042..2992066 (25 bp)
TGGGTTTACTTGGTGGCAACTCCAC
LOC_Os08g05600
OsAffx.16841.1.S1_at--116--2551Chr08:2992059..2992083 (25 bp)
AACTCCACTGGGTGCTATAGCTGGA
LOC_Os08g05600
Target Sequence 
TGATCTTCACCGTGCTATCAACCATCATCATGGATGAACAACACAAAAGTATCGAGACGCTCCTCGGAATCGCAACATCT
GCAGGCTTAGCAGTCACTGTTCTAGTTCTGTCCCTCATCCACATATCAGGATGCCATCTGAACCCTGCAATCAGCATCGC
CATGGCCGTCTTTGGTCACCTCCCTTCTGCTCATCTTCTACCTTACATTTCTTCACAAATTCTCGGGGCCGTCGCCGCCT
CCTTCGCCGTCAAAGGTCTGTATCATCCGGTGAACCCCGGGATTGTCACCGTGCCAAATGTCGGCACGGTTGAGGCGTTT
TTCGTCGAGTTCATAATAACATTTTTTCTACTGTTCATCATCACTGCTCTTGCCACTGATCCTAATGCAGTGAAAGAACT
GATAGCAGTGGCAGTTGGGGCAACAGTCATGATGAACATTCTTGTGGCAGGGCCATCAACAGGAGCATCGATGAATCCGG
CGCGTACAATTGGCGCGGCTATTGCCACAGGGAGATATACTCAGATTTGGGTTTACTTGGTGGCAACTCCACTGGGTGCT
ATAGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16841.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis