Browse Element(s) Details


Os.25510.1.S1_at

Description gb:AK065015.1
DB_XREF= gi:32975033
TID=Os.25510.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F10, full insert sequence.
FL= gb:AK065015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0565011/11Diacylglycerol kinase catalytic domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05600OsAffx.16841.1.S1_at11/118+2990687..2992113Major intrinsic protein
LOC_Os08g05610NANA8+2994086..2995489Cytochrome P450 89A2, putative
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed
LOC_Os08g05630Os.18267.1.S1_at11/118+3003288..3006183expressed protein
LOC_Os08g05640Os.8813.1.S1_s_at11/118+3007463..3009986pleckstrin homology domain-containing protein, putative, expressed
LOC_Os08g05650Os.25510.1.S1_at11/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05650Os.46700.1.S1_at1/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05660Os.12311.2.S1_at2/118+3016705..3020402LOC548366 protein, putative, expressed
LOC_Os08g05670Os.52212.1.S1_at10/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05670OsAffx.29049.1.S1_at8/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05680NANA8+3040165..3040594hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0030148biological_processsphingolipid biosynthesis
GO:0004143molecular_functiondiacylglycerol kinase activity
GO:0017050molecular_functionD-erythro-sphingosine kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25510.1.S1_at--1070--7871Chr08:3014898..3014922 (25 bp)
GGTTATCGCGCCAAAAGCTCAGCAT
LOC_Os08g05650
Os.25510.1.S1_at--152--1571Chr08:3014913..3014937 (25 bp)
AGCTCAGCATAATGACGGCAGTCTA
LOC_Os08g05650
Os.25510.1.S1_at--914--1151Chr08:3014932..3014956 (25 bp)
AGTCTAGACTTGATTCTTGTCCATG
LOC_Os08g05650
Os.25510.1.S1_at--515--6551Chr08:3014972..3014996 (25 bp)
GATTATTCTGCTTCTTTATCGCCTA
LOC_Os08g05650
Os.25510.1.S1_at--644--10151Chr08:3014988..3015012 (25 bp)
TATCGCCTATCAGTTTTGCTGGCAT
LOC_Os08g05650
Os.25510.1.S1_at--723--4971Chr08:3015009..3015033 (25 bp)
GCATCTTCTTCTGCCTTATGTGGAA
LOC_Os08g05650
Os.25510.1.S1_at--582--1811Chr08:3015267..3015291 (25 bp)
ACCCACAATGGGTGCGGTGTTGACG
LOC_Os08g05650
Os.25510.1.S1_at--694--2931Chr08:3015349..3015373 (25 bp)
AAGGCAGATTGCTTGGCCGGCATCG
LOC_Os08g05650
Os.25510.1.S1_at--1041--6071Chr08:3015384..3015408 (25 bp)
GAGTAGATTTCTAACCACCAAAGGT
LOC_Os08g05650
Os.25510.1.S1_at--648--7091Chr08:3015421..3015445 (25 bp)
GTCAAACTGAGGAACCACTTCAATG
LOC_Os08g05650
Os.25510.1.S1_at--264--3051Chr08:3015618..3015642 (25 bp)
AATCTCTACTTCTGACTTTACATGG
LOC_Os08g05650
Target Sequence 
GGTTATCGCGCCAAAAGCTCAGCATAATGACGGCAGTCTAGACTTGATTCTTGTCCATGGAAGTGGAAGACTCAGATTAT
TCTGCTTCTTTATCGCCTATCAGTTTTGCTGGCATCTTCTTCTGCCTTATGTGGAATATGTCAAGGTAAAACATGTTAAG
GTCAGGCCAATTGGCAAAACCCACAATGGGTGCGGTGTTGACGGAGAGCTTATTCTTGGAGAGGGCCAAACAGAATGGCA
GTGCTCACTGCTCCCAGCACAAGGCAGATTGCTTGGCCGGCATCGCAGCGCATNTGAGTAGATTTCTAACCACCAAAGGT
CCAAATTCAAGTGTCAAACTGAGGAACCACTTCAATGTATGAATTAAATTAAATCGGAGAAATTATGCATCAGAGAATGC
TTCTTTCTACCATTATATTTCACTATTTTTTGAGAGGTTGTAAATGAGGGGAAATTATGGGTTTTGGGGAGCTTCTAACC
CCCACCATTGGCCAATTGTATATTCTGAAATGAAAAAAAAAAGAAGAAAAATCTCTACTTCTGACTTTACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis