Browse Element(s) Details


OsAffx.29049.1.S1_at

Description tigr:9636.m00499
TID=OsAffx.29049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g056708/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed
LOC_Os08g05630Os.18267.1.S1_at11/118+3003288..3006183expressed protein
LOC_Os08g05640Os.8813.1.S1_s_at11/118+3007463..3009986pleckstrin homology domain-containing protein, putative, expressed
LOC_Os08g05650Os.25510.1.S1_at11/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05650Os.46700.1.S1_at1/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05660Os.12311.2.S1_at2/118+3016705..3020402LOC548366 protein, putative, expressed
LOC_Os08g05670Os.52212.1.S1_at10/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05670OsAffx.29049.1.S1_at8/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05680NANA8+3040165..3040594hypothetical protein
LOC_Os08g05690OsAffx.16842.1.S1_at11/118+3043824..3049729ABC transporter family protein
LOC_Os08g05700NANA8+3052200..3053044hypothetical protein
LOC_Os08g05710OsAffx.29051.1.S1_at11/118+3055522..3061514ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29049.1.S1_at--416--3431NONE
CAGATATGCCTTGGCCCGTAGGCCT
NONE
OsAffx.29049.1.S1_at--866--8391Chr08:3027622..3027646 (25 bp)
GGCCCGTAGGCCTAGTTGAATGTCC
LOC_Os08g05670
OsAffx.29049.1.S1_at--1101--831Chr08:3027615..3027639 (25 bp)
AGGCCTAGTTGAATGTCCCTATACC
LOC_Os08g05670
OsAffx.29049.1.S1_at--1065--6651Chr08:3027608..3027632 (25 bp)
GTTGAATGTCCCTATACCCAAGTGA
LOC_Os08g05670
OsAffx.29049.1.S1_at--279--5291Chr08:3027605..3027629 (25 bp)
GAATGTCCCTATACCCAAGTGACAT
LOC_Os08g05670
OsAffx.29049.1.S1_at--49--10191Chr08:3027596..3027620 (25 bp)
TATACCCAAGTGACATGCCATGACA
LOC_Os08g05670
OsAffx.29049.1.S1_at--638--591Chr08:3027582..3027606 (25 bp)
ATGCCATGACAACACGATGGAGGCG
LOC_Os08g05670
OsAffx.29049.1.S1_at--118--5631Chr08:3027575..3027599 (25 bp)
GACAACACGATGGAGGCGGCTGCCA
LOC_Os08g05670
OsAffx.29049.1.S1_at--661--6211Chr08:3027566..3027587 (22 bp)
GAGGCGGCTGCCACAAGGCCAGATT
LOC_Os08g05670
OsAffx.29049.1.S1_at--847--3931NONE
CGGCTGCCACAAGGCCAGATTATGG
NONE
OsAffx.29049.1.S1_at--136--3311NONE
CACAAGGCCAGATTATGGTAGCTCA
NONE
Target Sequence 
CAGATATGCCTTGGCCCGTAGGCCTAGTTGAATGTCCCTATACCCAAGTGACATGCCATGACAACACGATGGAGGCGGCT
GCCACAAGGCCAGATTATGGTAGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis