Browse Element(s) Details


Os.12311.2.S1_at

Description gb:AK058577.1
DB_XREF= gi:32968595
TID=Os.12311.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12311 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative r40c1 protein (P0436E04.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F03, full insert sequence.
FL= gb:AK058577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g056602/11LOC548366 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05600OsAffx.16841.1.S1_at11/118+2990687..2992113Major intrinsic protein
LOC_Os08g05610NANA8+2994086..2995489Cytochrome P450 89A2, putative
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed
LOC_Os08g05630Os.18267.1.S1_at11/118+3003288..3006183expressed protein
LOC_Os08g05640Os.8813.1.S1_s_at11/118+3007463..3009986pleckstrin homology domain-containing protein, putative, expressed
LOC_Os08g05650Os.25510.1.S1_at11/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05650Os.46700.1.S1_at1/118+3011015..3015682Diacylglycerol kinase catalytic domain family protein, expressed
LOC_Os08g05660Os.12311.2.S1_at2/118+3016705..3020402LOC548366 protein, putative, expressed
LOC_Os08g05670Os.52212.1.S1_at10/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05670OsAffx.29049.1.S1_at8/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05680NANA8+3040165..3040594hypothetical protein
LOC_Os08g05690OsAffx.16842.1.S1_at11/118+3043824..3049729ABC transporter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12311.2.S1_at--633--3091Chr08:3016809..3016833 (25 bp)
AATACAGTGGACACGCTGATGGCCA
LOC_Os08g05660
Os.12311.2.S1_at--1039--4731Chr08:3016795..3016819 (25 bp)
GCTGATGGCCAAGTCCAGGTTCAAA
LOC_Os08g05660
Os.12311.2.S1_at--498--2551Chr08:3016696..3016720 (25 bp)
AACTGCCAGAGCTTGATATGGATCC
NONE
Os.12311.2.S1_at--667--3811Chr08:3016658..3016682 (25 bp)
CTCCATTCTATGAACATTTCCCATG
NONE
Os.12311.2.S1_at--753--10291Chr08:3016642..3016666 (25 bp)
TTTCCCATGTTCAAGCAGGGCTTGT
NONE
Os.12311.2.S1_at--542--6291Chr08:3016531..3016555 (25 bp)
GATGATTAGGTTGCTGATGGTCTCA
NONE
Os.12311.2.S1_at--845--10791Chr08:3016455..3016479 (25 bp)
TTGTTCTGAACATCAGCCATCAGGT
NONE
Os.12311.2.S1_at--366--4951Chr08:3016335..3016359 (25 bp)
GCATTAGCATGTGGCCTATCCTGTT
NONE
Os.12311.2.S1_at--659--3511Chr08:3016303..3016327 (25 bp)
CATGAGATTCTTTAGCTGTGACTAC
NONE
Os.12311.2.S1_at--1131--7171Chr08:3016277..3016301 (25 bp)
GTCTGTACAGGTATGTGTGCCTATT
NONE
Os.12311.2.S1_at--81--8571Chr08:3016248..3016272 (25 bp)
TGGATCATTGGTCAATGTCACCCCA
NONE
Target Sequence 
AATACAGTGGACACGCTGATGGCCAAGTCCAGGTTCAAAGCAANGAAGAGATCCAGGGGCAAACGGGNATCCTGACACAT
GCAACTCACCGACTGNNCTATCACCNACANACTCAACTGCCAGAGCTTGATATGGATCCGGGGAAAAAAATTCTCCATTC
TATGAACATTTCCCATGTTCAAGCAGGGCTTGTTACNTNCCATTGTAAANGCATTAGTTTCTTGGCCACCAGCTCCTAGT
CCNGACTGTCTCNGTCAAAGATCATACTCATGTAATCAGCTGATGATTAGGTTGCTGATGGTCTCAGGTTGAGGTAATCA
AGAATAAACTGCTCATGTTTTGTGTATTTTTTTTCTTTTGTTCTGAACATCAGCCATCAGGTGGACTAGATGAACTTAGG
ACTGTAACATGTAGCAAAATTTTCCCAGTATAGTTATTGTGAGATTTGCAATGTCAGAACCAAACATGTGAAGTTGTGCA
TTAGCATGTGGCCTATCCTGTTCTCTTNTCATGAGATTCTTTAGCTGTGACTACAGTCTGTACAGGTATGTGTGCCTATT
TAATTGGATCATTGGTCAATGTCACCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12311.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis