Browse Element(s) Details


OsAffx.16842.1.S1_at

Description tigr:9636.m00501
TID=OsAffx.16842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0569011/11ABC transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05660Os.12311.2.S1_at2/118+3016705..3020402LOC548366 protein, putative, expressed
LOC_Os08g05670Os.52212.1.S1_at10/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05670OsAffx.29049.1.S1_at8/118+3024938..3032121HEAT repeat family protein, expressed
LOC_Os08g05680NANA8+3040165..3040594hypothetical protein
LOC_Os08g05690OsAffx.16842.1.S1_at11/118+3043824..3049729ABC transporter family protein
LOC_Os08g05700NANA8+3052200..3053044hypothetical protein
LOC_Os08g05710OsAffx.29051.1.S1_at11/118+3055522..3061514ABC transporter family protein, expressed
LOC_Os08g05720NANA8+3063440..3064189Integral membrane protein
LOC_Os08g05750OsAffx.29053.1.S1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05750Os.17179.1.A1_at11/118+3072996..3078236pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009926biological_processauxin polar transport
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005886cellular_componentplasma membrane
GO:0005516molecular_functioncalmodulin binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16842.1.S1_at--38--1411Chr08:3049174..3049198 (25 bp)
AGACTACAATCTCAGGTGGCTCAGG
LOC_Os08g05690
OsAffx.16842.1.S1_at--477--7571Chr08:3049208..3049232 (25 bp)
GGGCTAGTCCAACAAGAACCAATCT
LOC_Os08g05690
OsAffx.16842.1.S1_at--565--3072Chr08:3049228..3049252 (25 bp)
AATCTTGTTCAATTCATCCATCAGA
LOC_Os08g05690
OsAffx.16842.1.S1_at--95--131Chr08:3049322..3049346 (25 bp)
ATTCACGAATTCATCAGCAGCCTAC
LOC_Os08g05690
OsAffx.16842.1.S1_at--192--1631Chr08:3049407..3049431 (25 bp)
AGCGGATAGCTATTGCAAGAACTCT
LOC_Os08g05690
OsAffx.16842.1.S1_at--298--2751Chr08:3049423..3049447 (25 bp)
AAGAACTCTTCTTAAGCGTCCAGTC
LOC_Os08g05690
OsAffx.16842.1.S1_at--373--4651Chr08:3049438..3049462 (25 bp)
GCGTCCAGTCATTCTTCTTCTTGAT
LOC_Os08g05690
OsAffx.16842.1.S1_at--1143--6291Chr08:3049460..3049484 (25 bp)
GATGAGGCAACCAGCGCACTTGATG
LOC_Os08g05690
OsAffx.16842.1.S1_at--1099--1231Chr08:3049557..3049581 (25 bp)
AGATTACAAGTATCACAGTGGCGCA
LOC_Os08g05690
OsAffx.16842.1.S1_at--816--8391Chr08:3049576..3049600 (25 bp)
GGCGCATAGATTGTCCACGGTCATA
LOC_Os08g05690
OsAffx.16842.1.S1_at--743--10831Chr08:3049647..3049671 (25 bp)
TTGGTAATCACCACACACTGATCAC
LOC_Os08g05690
Target Sequence 
AGACTACAATCTCAGGTGGCTCAGGAAACAGATTGGGCTAGTCCAACAAGAACCAATCTTGTTCAATTCATCCATCAGAG
ATAACATTAGCTACGGAAGCGAAGAGACTTCAGAGACTGAAATAATTCAGGCTGCAATGGAGGCGAACATTCACGAATTC
ATCAGCAGCCTACCAAAAGGGTATGACACGGTTGTTGGGGAGAAAGGAAGCCAGCTTTCAGGAGGGCAGAAACAGCGGAT
AGCTATTGCAAGAACTCTTCTTAAGCGTCCAGTCATTCTTCTTCTTGATGAGGCAACCAGCGCACTTGATGGTGAATCTG
AGAGAGTGGTGATGAGTTCTTTAGGGGCCAAGGACTGGAAGGACAGAAATGAGGGATCAAGCAAGATTACAAGTATCACA
GTGGCGCATAGATTGTCCACGGTCATAAATTCAGACACGATTGTCGTGATGGAGAGAGGCAAAGTGGTTGAACTTGGTAA
TCACCACACACTGATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis