Browse Element(s) Details


Os.17179.1.A1_at

Description gb:AU225853
DB_XREF= gi:24208826
DB_XREF=AU225853
CLONE=KP3-0885
TID=Os.17179.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17179 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0575011/11pentatricopeptide, putative, expressed
LOC_Os04g268501/11Importin-beta N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05690OsAffx.16842.1.S1_at11/118+3043824..3049729ABC transporter family protein
LOC_Os08g05700NANA8+3052200..3053044hypothetical protein
LOC_Os08g05710OsAffx.29051.1.S1_at11/118+3055522..3061514ABC transporter family protein, expressed
LOC_Os08g05720NANA8+3063440..3064189Integral membrane protein
LOC_Os08g05750OsAffx.29053.1.S1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05750Os.17179.1.A1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05770NANA8+3082700..3083407hypothetical protein
LOC_Os08g05780Os.9594.1.S1_at11/118+3087435..3088496expressed protein
LOC_Os08g05790OsAffx.5720.1.S1_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_x_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_at10/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17179.1.A1_at--257--7632Chr03:35926849..35926871 (22 bp)
GGGACATTCTTCTCGGGACAGACAA
NONE
Os.17179.1.A1_at--487--5232Chr12:17017466..17017485 (20 bp)
GAATATGCCGCCGTCTTAAGAACAA
NONE
Os.17179.1.A1_at--648--6192Chr12:17029213..17029237 (25 bp)
GAGGCACATTCTTCTCGGACAGAGA
NONE
Os.17179.1.A1_at--1009--10212Chr12:17029299..17029323 (25 bp)
TATTCACTGTTATATGTTCTCGCTT
NONE
Os.17179.1.A1_at--247--6732Chr12:17029314..17029338 (25 bp)
GTTCTCGCTTTGTTCACCTATAAAT
NONE
Os.17179.1.A1_at--883--9651Chr08:3073238..3073262 (25 bp)
TCAGCATCTTATATTATCTCTGGTG
LOC_Os08g05750
Os.17179.1.A1_at--208--5553Chr12:17029369..17029392 (24 bp)
GAAACCCGTCATGCTAACAAGGTTA
NONE
Os.17179.1.A1_at--95--4831Chr08:3073196..3073220 (25 bp)
GCTAACAAGGTTACGGCGTCGCAAA
LOC_Os08g05750
Os.17179.1.A1_at--454--8652Chr12:17029423..17029447 (25 bp)
TGTGGTTCTGAAAGTGTCGATCTGT
NONE
Os.17179.1.A1_at--936--7212Chr12:17029438..17029462 (25 bp)
GTCGATCTGTGTATATCATAGCTTT
NONE
Os.17179.1.A1_at--987--10232Chr04:15682306..15682595 (25 bp)
TTTGTGGCTGAATGTATACTACTTG
LOC_Os04g26850
Target Sequence 
GGGACATTCTTCTCGGGACAGACAATATATGCTCTAGATGTCTATTACAGTGATTTCTGAATATGCCGCCGTCTTAAGAA
CAAGGCAGGGTGANGCAATACAAAGAAAAACTTTTTCAGCTTGTGATGATATTTTCAGCACAATGTGTGATCATATGTCA
TAACTTATGCAGAACAAGGTAGAGTGAGGCACATTCTTCTCGGACAGAGAATATATAGAAGAGTGGCAAGACAAAGAAAA
ACTCTACATGCATATTCCAGTGATTTCTGAATATTCACTGTTATATGTTCTCGCTTTGTTCACCTATAAATCAGCATCTT
ATATTATCTCTGGTGCAGCAGAAACCCGTCATGCTAACAAGGTTACGGCGTCGCAAAATATTGGAAAAGAGAAGTTTGTG
GTTCTGAAAGTGTCGATCTGTGTATATCATAGCTTTTGTGGCTGAATGTATACTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17179.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis