Browse Element(s) Details


Os.24052.1.S1_x_at

Description gb:AK063541.1
DB_XREF= gi:32973559
TID=Os.24052.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-C06, full insert sequence.
FL= gb:AK063541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0579011/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05750OsAffx.29053.1.S1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05750Os.17179.1.A1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05770NANA8+3082700..3083407hypothetical protein
LOC_Os08g05780Os.9594.1.S1_at11/118+3087435..3088496expressed protein
LOC_Os08g05790OsAffx.5720.1.S1_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_x_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_at10/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed
LOC_Os08g05810Os.54300.1.S1_at5/118+3107628..3110952DEAD/DEAH box helicase, putative
LOC_Os08g05820OsAffx.29054.1.S1_at11/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05820Os.23535.1.A1_at9/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05830Os.40427.1.A1_s_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05830Os.54032.1.S1_at11/118+3122024..3125895Transaldolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0042409molecular_functioncaffeoyl-CoA O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24052.1.S1_x_at--984--4691Chr08:3097195..3097219 (25 bp)
GCTGCGGATTCCCTAAAGTTACTAA
LOC_Os08g05790
Os.24052.1.S1_x_at--670--6951Chr08:3097643..3097666 (24 bp)
GTAGAGTTGCTGATCCACTAGTGAA
LOC_Os08g05790
Os.24052.1.S1_x_at--784--5531Chr08:3097815..3097839 (25 bp)
GAAACTTCTGGAGGATAATCGTGTC
LOC_Os08g05790
Os.24052.1.S1_x_at--832--351Chr08:3097829..3097853 (25 bp)
ATAATCGTGTCAGCATCAGCATGGT
LOC_Os08g05790
Os.24052.1.S1_x_at--113--6513Chr08:3098476..3098500 (25 bp)
GATATGGATTTTGGGCGTGTGCCTT
LOC_Os08g05790
Os.24052.1.S1_x_at--595--8293Chr12:8649995..8650016 (22 bp)
GGCTTCTCGCGACATTATCTTCAAA
NONE
Os.24052.1.S1_x_at--1136--2993Chr12:8650113..8650137 (25 bp)
AATGATGTTCGTGGCCTTTTGTGAT
NONE
Os.24052.1.S1_x_at--45--7951Chr08:3098591..3098615 (25 bp)
GGATATGGAGGTTCTGTCTCGGAAT
LOC_Os08g05790
Os.24052.1.S1_x_at--37--2034Chr12:8650190..8650215 (25 bp)
ACTAGTGGCTTCATTCAGGCGGTAC
NONE
Os.24052.1.S1_x_at--702--3473Chr08:3098645..3098669 (25 bp)
CAGGCGGTACTTGTTACTAATTCTT
LOC_Os08g05790
Os.24052.1.S1_x_at--499--7011Chr08:3098711..3098735 (25 bp)
GTACTTGGCAATGGATTTCTTTCTT
LOC_Os08g05790
Target Sequence 
GCTGCGGATTCCCTAAAGTTACTAATTGATGGTGGTGAGGTTAACAGTTATGACTTTGCATTCGTTGATGCAGACAAGAG
AATGTATGAGGAGTATTATGAACTTCTACTTAAGCTAGTAAGAGTTGGTGGTTTGATTGTAATAGACAATGTCCTTTGGT
ATGGTAGAGTTGCTGATCCACTAGTGAATGATCGAAAGACAATTAGTATAAGGAACTTCAACAAGAAACTTCTGGAGGAT
AATCGTGTCAGCATCAGCATGGTGCCAATCGGGGACGGGATGACAATTTGTCGGAAGCTAGTAGATACCTGACTGAACAA
CATACTCTTTCTAGATATGGATTTTGGGCGTGTGCCTTTTTGGCTTCTCGCGACATTATCTTCAAAGGGTATCTATAGAA
GGATGCAGGTAATGATGTTCGTGGCCTTTTGTGATTCTGTTAAGTTTGGGATATGGAGGTTCTGTCTCGGAATGAGGGGG
CAACAATACTAGTGGCTTCATTCAGGCGGTACTTGTTACTAATTCTTTAAGTCCGGGGTTAAATCCCTAAGTCTGACCTT
AATTGGTTGTACTTGGCAATGGATTTCTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24052.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis