Browse Element(s) Details


Os.9594.1.S1_at

Description gb:AU085821
DB_XREF= gi:7332475
DB_XREF=AU085821
CLONE=C60941
TID=Os.9594.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9594 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_197848.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0578011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05720NANA8+3063440..3064189Integral membrane protein
LOC_Os08g05750OsAffx.29053.1.S1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05750Os.17179.1.A1_at11/118+3072996..3078236pentatricopeptide, putative, expressed
LOC_Os08g05770NANA8+3082700..3083407hypothetical protein
LOC_Os08g05780Os.9594.1.S1_at11/118+3087435..3088496expressed protein
LOC_Os08g05790OsAffx.5720.1.S1_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_x_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_at10/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed
LOC_Os08g05810Os.54300.1.S1_at5/118+3107628..3110952DEAD/DEAH box helicase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9594.1.S1_at--638--2891Chr08:3087592..3087616 (25 bp)
AAGGTGTTTGTTGCCTGTGCCTGCA
LOC_Os08g05780
Os.9594.1.S1_at--852--6851Chr08:3087587..3087611 (25 bp)
GTTTGTTGCCTGTGCCTGCATGCAG
LOC_Os08g05780
Os.9594.1.S1_at--945--4451Chr08:3087574..3087598 (25 bp)
GCCTGCATGCAGGTGATCTGGATTC
LOC_Os08g05780
Os.9594.1.S1_at--337--6411Chr08:3087560..3087584 (25 bp)
GATCTGGATTCAGCAGCTCGTTGAA
LOC_Os08g05780
Os.9594.1.S1_at--968--10511Chr08:3087552..3087576 (25 bp)
TTCAGCAGCTCGTTGAATCAAGATT
LOC_Os08g05780
Os.9594.1.S1_at--338--7851Chr08:3087506..3087530 (25 bp)
GGTATAAATAAAATCGCCGTGCCTA
LOC_Os08g05780
Os.9594.1.S1_at--489--9811Chr08:3087498..3087522 (25 bp)
TAAAATCGCCGTGCCTAGGATTCAA
LOC_Os08g05780
Os.9594.1.S1_at--732--531Chr08:3087494..3087518 (25 bp)
ATCGCCGTGCCTAGGATTCAATATC
LOC_Os08g05780
Os.9594.1.S1_at--551--7271Chr08:3087488..3087512 (25 bp)
GTGCCTAGGATTCAATATCTCGTTG
LOC_Os08g05780
Os.9594.1.S1_at--87--10151Chr08:3087473..3087497 (25 bp)
TATCTCGTTGAATCCTAGATTTGTC
LOC_Os08g05780
Os.9594.1.S1_at--400--9011Chr08:3087465..3087489 (25 bp)
TGAATCCTAGATTTGTCGCGACAAA
LOC_Os08g05780
Target Sequence 
AAGGTGTTTGTTGCCTGTGCCTGCATGCAGGTGATCTGGATTCAGCAGCTCGTTGAATCAAGATTAATAATTAGTTTATG
TACTTTGGTATAAATAAAATCGCCGTGCCTAGGATTCAATATCTCGTTGAATCCTAGATTTGTCGCGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis