Browse Element(s) Details


Os.54300.1.S1_at

Description gb:AK103192.1
DB_XREF= gi:32988401
TID=Os.54300.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121O14, full insert sequence.
FL= gb:AK103192.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g058105/11DEAD/DEAH box helicase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05770NANA8+3082700..3083407hypothetical protein
LOC_Os08g05780Os.9594.1.S1_at11/118+3087435..3088496expressed protein
LOC_Os08g05790OsAffx.5720.1.S1_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_x_at11/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05790Os.24052.1.S1_at10/118+3095669..3099096O-methyltransferase family protein, expressed
LOC_Os08g05800OsAffx.17941.1.A1_s_at11/118+3102552..3106492NB-ARC domain containing protein, expressed
LOC_Os08g05810Os.54300.1.S1_at5/118+3107628..3110952DEAD/DEAH box helicase, putative
LOC_Os08g05820OsAffx.29054.1.S1_at11/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05820Os.23535.1.A1_at9/118+3113982..3119122Multicopper oxidase family protein, expressed
LOC_Os08g05830Os.40427.1.A1_s_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05830Os.54032.1.S1_at11/118+3122024..3125895Transaldolase family protein, expressed
LOC_Os08g05840Os.21861.1.S1_at11/118+3130416..3136534DNA topoisomerase I, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54300.1.S1_at--569--1911Chr08:3108286..3108310 (25 bp)
ACGTGTCCTTGAGGATTGTGCCAAT
LOC_Os08g05810
Os.54300.1.S1_at--531--2891Chr08:3107739..3107763 (25 bp)
AAGGTGGACTGCGATTCTTGTCTTC
LOC_Os08g05810
Os.54300.1.S1_at--43--10811Chr08:3107722..3107746 (25 bp)
TTGTCTTCCTTGATGACGGCGTTAT
LOC_Os08g05810
Os.54300.1.S1_at--724--6791Chr08:3107702..3107726 (25 bp)
GTTATCTGCAACATCCGTGCTGAGA
LOC_Os08g05810
Os.54300.1.S1_at--152--6371Chr08:3107633..3107657 (25 bp)
GATCCACTAGGTTACAGCATCACTG
LOC_Os08g05810
Os.54300.1.S1_at--831--6431Chr08:3107605..3107629 (25 bp)
GATCATGCCAGATTGCACACTACAT
NONE
Os.54300.1.S1_at--1095--2111Chr08:3107470..3107586 (25 bp)
ACAGGCAAAGCCACATATTCACCAG
NONE
Os.54300.1.S1_at--1109--2331Chr08:3107439..3107463 (25 bp)
AAAGAAGTCATCGTCCTAGGAGCTT
NONE
Os.54300.1.S1_at--432--8871Chr08:3107415..3107439 (25 bp)
TGATGGAGAACCAGGCTCCTCACAA
NONE
Os.54300.1.S1_at--567--1131Chr08:3107328..3107352 (25 bp)
AGTGCCAATCACTCATAACAGGGAT
NONE
Os.54300.1.S1_at--1063--6031Chr08:3107297..3107321 (25 bp)
GAGATCGTTGTTCGTTGAGTTATAC
NONE
Target Sequence 
ACGTGTCCTTGAGGATTGTGCCAATCATGCTCTGAACCTTCCTGGTTCTGCCCAAACTGGAAAGTACTCTGTTATTTGAG
CTGCGGATTGCTAACAGAACAGCTAATTCAGAGATGCAGGGTTTTCTTGTGAAGGTCTTTCTTGGAAGGTGGACTGCGAT
TCTTGTCTTCCTTGATGACGGCGTTATCTGCAACATCCGTGCTGAGAAGCTGGATAAGTGGCAGGTTAGGGTGTTCTATG
TGAAAGTTGCTGATCCACTAGGTTACAGCATCACTGAATGATCATGCCAGATTGCACACTACATATTGTAGCCTACCAAA
AGACAGGCAAAGCCACATATTCACCAGCCAAAAAAAGAAGTCATCGTCCTAGGAGCTTGATGGAGAACCAGGCTCCTCAC
AACTGCGTTGCTGATAATTGCAGTTAAATTTGTTGAAATCCAAGGATTTGTTAGGCTTTTTAGGAGTGCCAATCACTCAT
AACAGGGATTAAAGTGAGATCGTTGTTCGTTGAGTTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis